Os01g0963600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0963600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ABA/WDS induced protein family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	15.4	(0.0473)	R²	:	0.433
β₁	:	0.655	(0.25)	R²_dD	:	0.0223	R²_D	:	0.114
β₂	:	0.706	(0.109)	R²_dC	:	0.0515	R²_C	:	0.0415
β₃	:	-1.15	(0.276)	R²_dE	:	0.0265	R²_E	:	-0.0268
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-13	(1.49)	R²_dD*E	:	0.269	R²_D*E	:	0.353
γ₁	:	0.135	(0.106)	R²_dN8	:	0.00442	R²_N8	:	-0.00544
σ	:	0.777
deviance	:	278.64
__

_____

C
peak time of C	:	18.8
E
wheather	:	temperature
threshold	:	12.15
memory length	:	1476
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	18.1
open length of G	:	0.804

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
280.04	0.786	15.4	0.497	0.685	-0.975	-0.179	-12	0.107	18.7	12.26	1471	18.2	1.07
329.02	0.845	15.2	2.2	1.3	-1.16	0.32	--	0.482	18.4	13.52	307	13.6	5.21
278.64	0.777	15.4	0.655	0.706	-1.15	--	-13	0.135	18.8	12.15	1476	18.1	0.804
328.39	0.844	15.2	2.27	1.35	-1.28	--	--	0.482	18.3	17.27	302	13.6	5.22
303.19	0.811	15.4	0.487	--	-1.02	--	-13.5	0.13	--	12.26	1470	18.2	0.766
349.28	0.876	15.2	2.11	0.68	--	-0.0315	--	0.419	18.6	--	--	--	--
349.29	0.875	15.2	2.11	0.68	--	--	--	0.419	18.6	--	--	--	--
349.43	0.871	15.2	2.37	--	-0.906	--	--	0.391	--	18.21	1228	14.4	4.02
454.11	0.993	15.3	--	1.09	-0.947	--	--	0.185	18.6	17.33	179	15.3	3.85
373.34	0.903	15.2	2.09	--	--	--	--	0.405	--	--	--	--	--
466.44	1.01	15.3	--	0.653	--	--	--	0.184	18.7	--	--	--	--
481.06	1.02	15.3	--	--	-0.448	--	--	0.145	--	16.39	1008	16	5.7
488.76	1.03	15.3	--	--	--	--	--	0.173	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	287.13	temperature	10	1440	> th	dose dependent	rect.	18	1
3	288.51	temperature	10	1440	> th	dose dependent	rect.	16	4
4	288.62	temperature	30	1440	< th	dose dependent	rect.	18	1
41	291.58	temperature	10	1440	> th	dose dependent	rect.	11	11
89	292.52	radiation	1	1440	< th	dose dependent	rect.	8	22
94	292.65	radiation	1	4320	< th	dose dependent	rect.	12	11
99	292.72	radiation	1	4320	< th	dose dependent	rect.	12	15
100	292.73	radiation	1	4320	< th	dose dependent	rect.	12	7
106	292.77	temperature	10	1440	> th	dose dependent	sin	19	NA
137	293.04	radiation	1	4320	> th	dose independent	rect.	12	7
207	293.82	radiation	1	4320	< th	dose dependent	sin	17	NA
245	294.02	radiation	1	4320	< th	dose independent	rect.	12	13
248	294.03	radiation	1	4320	> th	dose independent	sin	17	NA
251	294.04	radiation	1	4320	< th	dose independent	rect.	12	7
253	294.05	radiation	1	4320	< th	dose independent	rect.	12	11
377	294.91	radiation	1	4320	< th	dose independent	rect.	9	21
396	295.05	radiation	1	4320	< th	dose independent	sin	17	NA
647	297.00	humidity	50	14400	< th	dose independent	rect.	16	1
667	297.18	temperature	30	720	< th	dose dependent	rect.	5	18
702	297.54	radiation	1	1440	< th	dose dependent	rect.	18	22
746	297.77	temperature	30	720	< th	dose dependent	rect.	5	20
756	297.85	wind	7	43200	> th	dose dependent	rect.	20	13
825	298.37	wind	9	43200	< th	dose independent	rect.	20	13
827	298.38	temperature	30	1440	< th	dose dependent	rect.	8	15
868	298.61	wind	9	43200	> th	dose independent	rect.	20	12
943	298.92	temperature	30	1440	< th	dose dependent	sin	19	NA
950	298.96	temperature	10	1440	> th	dose dependent	no	NA	NA
995	299.21	wind	9	43200	< th	dose independent	sin	10	NA