Os01g0963200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase (EC 1.11.1.7) (Fragment).
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Os01g0963200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase (EC 1.11.1.7) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.62 | 0.605 | 9.36 | -2.39 | 1.53 | 0.227 | 0.724 | -1.84 | -2.04 | 22.9 | 3.006 | 44 | -- | -- |
| 179.4 | 0.624 | 9.41 | -2.4 | 1.5 | 0.361 | 0.966 | -- | -2.09 | 22.7 | 5.5 | 33 | -- | -- |
| 167.79 | 0.603 | 9.36 | -2.41 | 1.53 | 0.216 | -- | -1.91 | -2.04 | 22.9 | 3.1 | 43 | -- | -- |
| 180.11 | 0.625 | 9.4 | -2.34 | 1.52 | 0.807 | -- | -- | -2.04 | 22.5 | 7.1 | 45 | -- | -- |
| 282.8 | 0.783 | 9.33 | -2.17 | -- | 0.795 | -- | 1.05 | -1.99 | -- | 3.975 | 661 | -- | -- |
| 182.37 | 0.633 | 9.42 | -2.43 | 1.5 | -- | 0.937 | -- | -2.09 | 22.5 | -- | -- | -- | -- |
| 185.73 | 0.638 | 9.42 | -2.46 | 1.5 | -- | -- | -- | -2.09 | 22.3 | -- | -- | -- | -- |
| 262.96 | 0.755 | 9.36 | -2.04 | -- | 1.41 | -- | -- | -2.08 | -- | 3.5 | 688 | -- | -- |
| 313.5 | 0.825 | 9.34 | -- | 1.53 | 1.75 | -- | -- | -1.77 | 22.8 | 7.099 | 52 | -- | -- |
| 322.26 | 0.839 | 9.38 | -2.44 | -- | -- | -- | -- | -2.09 | -- | -- | -- | -- | -- |
| 345.79 | 0.87 | 9.36 | -- | 1.49 | -- | -- | -- | -1.82 | 22.2 | -- | -- | -- | -- |
| 369.18 | 0.895 | 9.34 | -- | -- | 1.96 | -- | -- | -1.91 | -- | 4 | 696 | -- | -- |
| 479.5 | 1.02 | 9.32 | -- | -- | -- | -- | -- | -1.82 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 4 | 153.84 | temperature | 10 | 270 | > th | dose dependent | sin | 13 | NA |
| 8 | 154.25 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 12 |
| 10 | 154.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 24 | 154.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 37 | 155.54 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 56 | 156.22 | temperature | 30 | 270 | < th | dose dependent | sin | 13 | NA |
| 60 | 156.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 75 | 156.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 83 | 156.96 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 11 |
| 88 | 157.00 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 8 |
| 125 | 157.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 160 | 158.15 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 9 |
| 202 | 158.54 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 8 |
| 227 | 158.69 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 229 | 158.71 | temperature | 25 | 270 | < th | dose independent | rect. | 18 | 13 |
| 231 | 158.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 301 | 159.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 331 | 159.55 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 12 |
| 418 | 160.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 433 | 160.27 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 481 | 160.51 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 11 |
| 488 | 160.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 508 | 160.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 653 | 161.41 | radiation | 1 | 720 | < th | dose dependent | sin | 17 | NA |
| 665 | 161.47 | wind | 3 | 30 | < th | dose independent | sin | 4 | NA |
| 677 | 161.52 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 19 |
| 682 | 161.53 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 706 | 161.59 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 779 | 161.82 | radiation | 1 | 720 | > th | dose independent | sin | 17 | NA |
| 787 | 161.86 | radiation | 1 | 720 | < th | dose independent | sin | 17 | NA |
| 797 | 161.90 | temperature | 20 | 270 | > th | dose independent | sin | 14 | NA |
| 824 | 162.03 | wind | 3 | 30 | < th | dose independent | rect. | 1 | 14 |
| 899 | 162.35 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 2 |
| 916 | 162.44 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 3 |
| 920 | 162.47 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 5 |
| 995 | 162.66 | wind | 3 | 30 | < th | dose independent | rect. | 23 | 16 |