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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0962900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase BP 1 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0153) R2 : 0.00129
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0246 (0.0321) R2dN8 : 0.00167 R2N8 : 0.00129
σ : 0.287
deviance : 37.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.82 0.281 2.91 0.00607 0.0478 -0.293 -0.253 1.1 -0.0452 13.9 1009 11 -- --
36.78 0.282 2.91 -0.0136 0.0484 -0.243 -0.246 -- -0.0103 13.6 1015 8 -- --
36.06 0.28 2.91 0.00222 0.047 -0.299 -- 1.1 -0.0466 13.5 1009 8 -- --
37.02 0.283 2.91 -0.0198 0.0483 -0.243 -- -- -0.013 13.5 1014 8 -- --
36.2 0.28 2.91 0.000146 -- -0.292 -- 1.11 -0.0471 -- 1009 8 -- --
37.44 0.287 2.9 -0.0247 0.0452 -- -0.257 -- 0.0231 13.3 -- -- -- --
37.71 0.288 2.9 -0.0337 0.0457 -- -- -- 0.0215 12.6 -- -- -- --
37.16 0.284 2.91 -0.0219 -- -0.234 -- -- -0.0139 -- 1014 8 -- --
37.03 0.283 2.91 -- 0.0485 -0.246 -- -- -0.0114 13.5 1014 8 -- --
37.84 0.287 2.9 -0.0353 -- -- -- -- 0.0207 -- -- -- -- --
37.74 0.287 2.9 -- 0.0462 -- -- -- 0.0253 12.6 -- -- -- --
37.17 0.284 2.91 -- -- -0.236 -- -- -0.0121 -- 1014 8 -- --
37.87 0.287 2.9 -- -- -- -- -- 0.0246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.55 radiation 1.0 43200 < th dose dependent rect. 21 1
4 34.23 temperature 10.0 30 > th dose dependent rect. 21 23
19 34.81 atmosphere 1000.0 30 > th dose independent rect. 21 23
21 34.88 temperature 10.0 1440 > th dose independent rect. 21 1
24 34.88 temperature 30.0 1440 < th dose independent rect. 21 1
28 34.88 humidity 50.0 1440 > th dose independent rect. 21 1
34 34.88 atmosphere 995.0 1440 > th dose independent rect. 21 1
35 34.88 radiation 1.0 1440 < th dose independent rect. 21 1
55 34.88 temperature 10.0 1440 > th dose independent rect. 22 23
58 34.88 atmosphere 1005.0 30 > th dose dependent rect. 20 1
60 34.89 wind 3.0 30 > th dose independent rect. 20 1
61 34.89 temperature 25.0 30 > th dose independent rect. 20 1
62 34.89 humidity 90.0 30 < th dose independent rect. 20 1
63 34.89 atmosphere 1005.0 30 > th dose independent rect. 20 1
64 34.89 temperature 25.0 30 > th dose dependent rect. 20 1
68 34.90 wind 5.0 30 < th dose independent rect. 20 1
70 34.90 humidity 80.0 30 > th dose independent rect. 20 1
71 34.90 temperature 10.0 30 > th dose dependent rect. 20 1
75 34.90 atmosphere 995.0 30 > th dose dependent rect. 20 1
81 34.91 temperature 10.0 30 > th dose independent rect. 20 1
83 34.91 temperature 30.0 30 < th dose independent rect. 20 1
84 34.91 humidity 50.0 30 > th dose independent rect. 20 1
87 34.91 atmosphere 1005.0 10 > th dose independent rect. 11 1
89 34.91 atmosphere 995.0 30 > th dose independent rect. 20 1
91 34.91 atmosphere 1010.0 30 < th dose independent rect. 20 1
93 34.91 radiation 1.0 30 < th dose independent rect. 20 1
98 34.91 precipitation 0.1 30 < th dose independent rect. 20 1
99 34.91 temperature 10.0 30 > th dose independent rect. 21 23
101 34.91 wind 7.0 30 < th dose dependent rect. 20 1
103 34.91 humidity 50.0 30 > th dose dependent rect. 20 1
105 34.91 radiation 1.0 30 < th dose dependent rect. 20 1
110 34.91 precipitation 0.1 30 < th dose dependent rect. 20 1
111 34.92 wind 1.0 30 > th dose dependent rect. 20 1
117 34.93 humidity 90.0 30 < th dose dependent rect. 20 1
118 34.93 atmosphere 1015.0 30 < th dose dependent rect. 20 1
121 34.94 temperature 25.0 30 > th dose dependent rect. 20 3
125 34.96 precipitation 0.1 30 < th dose independent rect. 21 23
128 34.96 precipitation 0.1 30 < th dose dependent rect. 21 23
133 34.98 temperature 30.0 30 < th dose dependent rect. 20 1
137 34.99 atmosphere 1000.0 30 > th dose dependent rect. 11 10
182 35.13 atmosphere 1000.0 10 > th dose dependent rect. 11 12
187 35.14 wind 9.0 30 < th dose independent rect. 21 23
188 35.15 radiation 30.0 10 < th dose independent rect. 12 1
195 35.18 temperature 25.0 30 > th dose dependent rect. 20 8
202 35.20 radiation 1.0 720 < th dose dependent rect. 21 8
213 35.23 temperature 15.0 30 > th dose dependent rect. 23 21
222 35.27 temperature 20.0 720 < th dose dependent rect. 6 4
240 35.31 atmosphere 1015.0 30 < th dose dependent rect. 21 23
246 35.33 atmosphere 1000.0 30 > th dose dependent rect. 11 1
256 35.36 atmosphere 1005.0 10 > th dose dependent rect. 1 22
257 35.37 precipitation 0.1 1440 < th dose independent rect. 21 1
258 35.37 precipitation 0.1 1440 < th dose dependent rect. 21 1
271 35.39 temperature 20.0 4320 < th dose independent rect. 9 1
274 35.40 temperature 20.0 4320 > th dose independent rect. 9 1
279 35.41 atmosphere 1005.0 30 > th dose independent rect. 5 7
285 35.43 temperature 20.0 270 < th dose independent rect. 8 4
286 35.43 atmosphere 1005.0 30 > th dose independent rect. 20 16
287 35.43 atmosphere 1005.0 10 > th dose dependent rect. 5 18
297 35.46 temperature 15.0 30 > th dose dependent rect. 6 14
302 35.47 wind 7.0 14400 > th dose dependent rect. 7 1
308 35.47 atmosphere 1005.0 30 > th dose dependent rect. 1 20
316 35.48 temperature 30.0 90 < th dose dependent rect. 1 11
318 35.48 atmosphere 1005.0 30 > th dose dependent rect. 5 16
324 35.49 radiation 20.0 720 > th dose independent rect. 15 16
328 35.49 wind 9.0 43200 > th dose dependent rect. 1 6
329 35.49 wind 9.0 14400 > th dose dependent rect. 23 11
332 35.50 radiation 20.0 720 > th dose independent rect. 15 2
333 35.50 wind 9.0 43200 > th dose independent rect. 4 3
342 35.50 atmosphere 1005.0 30 > th dose independent rect. 11 10
352 35.50 wind 5.0 4320 < th dose dependent rect. 13 13
355 35.51 wind 9.0 43200 > th dose independent rect. 1 6
356 35.51 wind 9.0 43200 > th dose dependent rect. 3 4
358 35.51 wind 9.0 14400 > th dose dependent rect. 3 7
363 35.52 wind 1.0 14400 < th dose independent rect. 17 1
365 35.52 wind 9.0 14400 < th dose independent rect. 22 11
380 35.53 wind 9.0 14400 < th dose independent rect. 24 10
384 35.53 wind 9.0 14400 > th dose dependent rect. 5 5
386 35.53 wind 9.0 14400 > th dose dependent rect. 22 9
397 35.54 wind 9.0 14400 > th dose independent rect. 23 11
398 35.54 humidity 50.0 30 > th dose independent rect. 21 23
399 35.54 wind 9.0 14400 > th dose dependent rect. 5 1
400 35.54 temperature 30.0 30 < th dose dependent rect. 11 1
409 35.54 wind 9.0 4320 < th dose dependent rect. 12 14
414 35.55 wind 9.0 14400 > th dose independent rect. 3 1
415 35.55 wind 9.0 14400 > th dose independent rect. 5 1
417 35.55 radiation 20.0 90 < th dose independent rect. 10 1
427 35.55 wind 9.0 14400 > th dose dependent rect. 3 1
440 35.56 wind 9.0 14400 > th dose independent rect. 3 7
444 35.56 wind 1.0 43200 < th dose dependent rect. 14 1
470 35.57 wind 9.0 4320 > th dose independent rect. 21 8
471 35.57 wind 9.0 14400 > th dose independent rect. 23 8
473 35.57 radiation 1.0 720 < th dose independent rect. 21 8
479 35.57 atmosphere 995.0 720 > th dose independent rect. 17 16
490 35.57 temperature 20.0 10 > th dose dependent rect. 4 16
511 35.58 wind 9.0 14400 > th dose dependent rect. 24 4
521 35.58 wind 1.0 4320 > th dose dependent rect. 12 14
544 35.59 atmosphere 995.0 720 > th dose dependent rect. 9 3
563 35.60 wind 7.0 14400 > th dose independent rect. 7 1
569 35.60 temperature 10.0 720 > th dose independent rect. 9 8
571 35.60 atmosphere 1015.0 720 < th dose independent rect. 9 8
574 35.60 temperature 10.0 720 > th dose independent rect. 17 16
575 35.60 wind 1.0 14400 < th dose dependent rect. 17 1
589 35.61 wind 7.0 14400 < th dose independent rect. 7 1
590 35.61 wind 1.0 43200 < th dose independent rect. 14 1
592 35.61 humidity 90.0 14400 > th dose independent rect. 11 1
593 35.61 wind 7.0 4320 < th dose independent rect. 1 2
606 35.61 temperature 10.0 720 > th dose independent rect. 21 8
607 35.61 temperature 30.0 720 < th dose independent rect. 21 8
608 35.61 humidity 50.0 720 > th dose independent rect. 21 8
611 35.61 atmosphere 995.0 720 > th dose independent rect. 21 8
618 35.61 temperature 10.0 720 > th dose independent rect. 5 16
629 35.61 atmosphere 995.0 30 > th dose dependent rect. 20 16
644 35.62 precipitation 0.1 720 < th dose independent rect. 21 8
645 35.62 atmosphere 1005.0 30 > th dose independent rect. 11 12
654 35.62 precipitation 0.1 720 < th dose dependent rect. 21 8
674 35.63 atmosphere 995.0 720 > th dose independent rect. 9 8
676 35.63 wind 1.0 4320 > th dose dependent rect. 19 1
677 35.63 wind 9.0 4320 < th dose dependent rect. 19 1
678 35.63 temperature 20.0 720 < th dose dependent rect. 24 1
691 35.64 wind 9.0 14400 < th dose independent rect. 5 5
698 35.64 radiation 20.0 720 < th dose independent rect. 15 9
699 35.64 precipitation 0.1 720 < th dose independent rect. 17 16
701 35.64 atmosphere 1005.0 30 > th dose independent rect. 16 20
702 35.64 atmosphere 1015.0 30 < th dose independent rect. 21 23
720 35.64 precipitation 0.1 720 < th dose dependent rect. 17 16
736 35.65 wind 9.0 14400 < th dose independent rect. 2 8
740 35.65 wind 5.0 4320 < th dose dependent sin 17 NA
770 35.66 atmosphere 995.0 720 > th dose independent rect. 5 16
773 35.66 radiation 20.0 90 < th dose dependent rect. 10 1
775 35.66 radiation 1.0 14400 < th dose dependent rect. 21 3
788 35.66 temperature 20.0 1440 < th dose dependent rect. 6 18
790 35.67 wind 1.0 14400 > th dose independent rect. 17 1
805 35.67 atmosphere 1005.0 30 > th dose independent rect. 1 11
806 35.67 wind 9.0 4320 < th dose dependent sin 18 NA
836 35.68 temperature 20.0 4320 < th dose dependent rect. 9 1
849 35.68 wind 1.0 1440 < th dose dependent rect. 17 6
951 35.69 atmosphere 1000.0 30 > th dose dependent rect. 1 11
970 35.70 humidity 90.0 14400 < th dose independent rect. 11 1
972 35.70 wind 9.0 14400 < th dose independent rect. 5 3
980 35.70 temperature 30.0 720 < th dose independent rect. 21 17
981 35.70 wind 1.0 4320 > th dose dependent sin 18 NA
992 35.70 radiation 30.0 90 < th dose dependent rect. 9 3