Os01g0962400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0185 family protein.
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Os01g0962400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0185 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.8 | 0.281 | 12.2 | 0.421 | 0.444 | 0.766 | -0.0615 | -7.45 | -0.362 | 12.1 | 29.9 | 4120 | -- | -- |
| 40.84 | 0.3 | 12.3 | -0.864 | 0.433 | -0.0382 | -0.131 | -- | -0.468 | 11.8 | 29.9 | 4120 | -- | -- |
| 35.81 | 0.279 | 12.2 | 0.423 | 0.442 | 0.771 | -- | -7.49 | -0.362 | 12.1 | 29.9 | 4101 | -- | -- |
| 39.65 | 0.293 | 12.3 | -1.01 | 0.451 | -0.166 | -- | -- | -0.527 | 11.9 | 31.1 | 28863 | -- | -- |
| 47.77 | 0.322 | 12.2 | 0.51 | -- | 0.865 | -- | -7.64 | -0.33 | -- | 29.8 | 3988 | -- | -- |
| 40.89 | 0.3 | 12.3 | -0.859 | 0.441 | -- | -0.124 | -- | -0.469 | 11.8 | -- | -- | -- | -- |
| 40.95 | 0.3 | 12.3 | -0.864 | 0.441 | -- | -- | -- | -0.47 | 11.9 | -- | -- | -- | -- |
| 51.55 | 0.336 | 12.3 | -0.904 | -- | -0.201 | -- | -- | -0.469 | -- | 29.8 | 3988 | -- | -- |
| 50.58 | 0.331 | 12.3 | -- | 0.432 | 0.462 | -- | -- | -0.192 | 11.9 | 26.12 | 47520 | -- | -- |
| 53.21 | 0.341 | 12.3 | -0.877 | -- | -- | -- | -- | -0.475 | -- | -- | -- | -- | -- |
| 60.64 | 0.364 | 12.3 | -- | 0.452 | -- | -- | -- | -0.373 | 12 | -- | -- | -- | -- |
| 55.24 | 0.346 | 12.3 | -- | -- | 0.673 | -- | -- | -0.214 | -- | 18.55 | 47520 | -- | -- |
| 73.52 | 0.4 | 12.3 | -- | -- | -- | -- | -- | -0.378 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.15 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 2 | 34.15 | wind | 1 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 3 | 34.18 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 4 | 34.21 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 5 | 34.25 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 7 | 34.28 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 8 | 34.32 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 9 | 34.34 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 11 | 34.39 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 13 | 34.44 | wind | 5 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 15 | 34.48 | wind | 3 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 16 | 34.57 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 18 | 34.61 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 19 | 34.61 | wind | 5 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 23 | 34.66 | wind | 5 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 24 | 34.68 | wind | 5 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 33 | 34.94 | wind | 5 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 42 | 35.03 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 44 | 35.06 | humidity | 70 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 50 | 35.19 | wind | 5 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 52 | 35.21 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 53 | 35.22 | wind | 5 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 54 | 35.22 | humidity | 70 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 55 | 35.22 | wind | 5 | 4320 | > th | dose independent | rect. | 14 | 7 |
| 58 | 35.25 | wind | 5 | 4320 | < th | dose independent | rect. | 14 | 7 |
| 66 | 35.28 | humidity | 80 | 4320 | < th | dose independent | rect. | 9 | 2 |
| 68 | 35.29 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 69 | 35.29 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 3 |
| 71 | 35.29 | wind | 5 | 4320 | > th | dose independent | rect. | 14 | 16 |
| 78 | 35.32 | wind | 5 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 82 | 35.34 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 10 |
| 83 | 35.34 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 12 |
| 86 | 35.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 7 |
| 91 | 35.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 18 |
| 117 | 35.39 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 127 | 35.44 | humidity | 80 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 133 | 35.46 | wind | 1 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 141 | 35.50 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 143 | 35.50 | wind | 3 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 144 | 35.51 | radiation | 40 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 151 | 35.51 | humidity | 70 | 43200 | < th | dose dependent | rect. | 23 | 13 |
| 163 | 35.55 | humidity | 60 | 43200 | > th | dose independent | sin | 7 | NA |
| 170 | 35.55 | humidity | 70 | 43200 | < th | dose dependent | rect. | 4 | 8 |
| 172 | 35.57 | radiation | 40 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 180 | 35.59 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 187 | 35.60 | humidity | 70 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 188 | 35.60 | humidity | 60 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 191 | 35.61 | temperature | 30 | 4320 | < th | dose independent | sin | 6 | NA |
| 214 | 35.63 | humidity | 60 | 43200 | < th | dose independent | sin | 6 | NA |
| 236 | 35.65 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 14 | 11 |
| 247 | 35.67 | humidity | 70 | 43200 | < th | dose dependent | sin | 7 | NA |
| 256 | 35.69 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 258 | 35.69 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 15 |
| 261 | 35.70 | temperature | 30 | 4320 | > th | dose independent | sin | 5 | NA |
| 267 | 35.70 | humidity | 70 | 4320 | < th | dose independent | rect. | 11 | 6 |
| 268 | 35.70 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 281 | 35.72 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 295 | 35.74 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 14 | 11 |
| 303 | 35.76 | humidity | 70 | 4320 | > th | dose independent | rect. | 11 | 6 |
| 308 | 35.76 | humidity | 60 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 313 | 35.77 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 320 | 35.78 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 339 | 35.81 | wind | 9 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 373 | 35.86 | atmosphere | 1005 | 4320 | > th | dose independent | sin | 15 | NA |
| 383 | 35.86 | humidity | 80 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 390 | 35.87 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 397 | 35.88 | humidity | 70 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 417 | 35.90 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 419 | 35.90 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 455 | 35.93 | humidity | 80 | 720 | > th | dose dependent | rect. | 24 | 18 |
| 456 | 35.93 | humidity | 80 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 458 | 35.94 | atmosphere | 1005 | 4320 | < th | dose independent | sin | 15 | NA |
| 464 | 35.94 | humidity | 80 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 467 | 35.94 | humidity | 80 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 487 | 35.95 | humidity | 80 | 30 | > th | dose dependent | no | NA | NA |
| 488 | 35.95 | humidity | 60 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 490 | 35.95 | humidity | 80 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 491 | 35.95 | humidity | 80 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 508 | 35.96 | humidity | 80 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 509 | 35.97 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 542 | 35.98 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 555 | 35.99 | humidity | 60 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 612 | 36.01 | humidity | 70 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 661 | 36.03 | humidity | 80 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 679 | 36.05 | humidity | 70 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 714 | 36.07 | humidity | 70 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 749 | 36.08 | wind | 5 | 4320 | > th | dose dependent | rect. | 14 | 17 |
| 770 | 36.09 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 20 |
| 861 | 36.12 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 17 |
| 930 | 36.14 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 17 |
| 951 | 36.14 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 21 |
| 966 | 36.14 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 14 |
| 969 | 36.14 | humidity | 80 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 970 | 36.15 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |