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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0962100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0217) R2 : 0.00283
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0519 (0.0456) R2dN8 : 0.00366 R2N8 : 0.00283
σ : 0.408
deviance : 76.45
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.69 0.398 3.16 1.37 0.0955 -0.901 0.173 7.35 0.0984 9.31 28.43 1728 -- --
75.05 0.403 3.31 0.103 0.119 -0.0826 0.128 -- -0.039 8.86 26.59 1663 -- --
71.78 0.395 3.16 1.38 0.0971 -0.912 -- 7.42 0.092 8.95 28.5 1714 -- --
75.01 0.403 3.31 0.13 0.141 -0.082 -- -- -0.0514 8.63 33 997 -- --
72.3 0.396 3.16 1.37 -- -0.926 -- 7.45 0.0906 -- 28.5 1740 -- --
75.3 0.407 3.31 0.0771 0.129 -- 0.127 -- -0.0442 8.29 -- -- -- --
75.35 0.406 3.31 0.0805 0.13 -- -- -- -0.0445 8.05 -- -- -- --
75.71 0.405 3.32 0.107 -- -0.112 -- -- -0.0618 -- 32.79 984 -- --
75.14 0.404 3.31 -- 0.141 -0.0929 -- -- -0.0647 7.52 33.7 978 -- --
76.28 0.408 3.31 0.0817 -- -- -- -- -0.0429 -- -- -- -- --
75.52 0.407 3.31 -- 0.131 -- -- -- -0.0534 8.01 -- -- -- --
75.97 0.406 3.32 -- -- -0.105 -- -- -0.0677 -- 33.9 978 -- --
76.45 0.408 3.31 -- -- -- -- -- -0.0519 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 63.22 atmosphere 1000.0 30 > th dose independent rect. 3 23
2 63.29 radiation 1.0 43200 < th dose dependent rect. 3 1
3 63.43 wind 9.0 30 < th dose independent rect. 3 23
5 63.76 atmosphere 1005.0 90 > th dose dependent rect. 2 1
9 64.05 radiation 1.0 4320 < th dose dependent rect. 3 1
18 64.14 wind 9.0 1440 < th dose independent rect. 3 1
19 64.14 temperature 10.0 1440 > th dose independent rect. 3 1
22 64.14 temperature 30.0 1440 < th dose independent rect. 3 1
26 64.14 humidity 50.0 1440 > th dose independent rect. 3 1
35 64.14 atmosphere 995.0 1440 > th dose independent rect. 3 1
36 64.14 radiation 1.0 1440 < th dose independent rect. 3 1
56 64.14 temperature 10.0 1440 > th dose independent rect. 4 23
67 64.23 temperature 25.0 90 > th dose independent rect. 2 1
68 64.24 temperature 20.0 30 > th dose dependent rect. 2 1
73 64.32 atmosphere 1005.0 30 > th dose independent rect. 2 1
75 64.34 wind 3.0 30 < th dose independent rect. 2 1
78 64.35 temperature 25.0 90 > th dose dependent rect. 1 3
79 64.36 wind 3.0 30 < th dose dependent rect. 2 1
88 64.41 temperature 10.0 30 > th dose independent rect. 2 1
90 64.41 temperature 30.0 30 < th dose independent rect. 2 1
91 64.41 humidity 50.0 30 > th dose independent rect. 2 1
95 64.41 atmosphere 1010.0 30 < th dose independent rect. 2 1
97 64.41 radiation 1.0 30 < th dose independent rect. 2 1
102 64.41 precipitation 0.1 30 < th dose independent rect. 2 1
103 64.41 temperature 10.0 30 > th dose independent rect. 3 23
104 64.41 humidity 50.0 30 > th dose dependent rect. 2 1
107 64.41 radiation 1.0 30 < th dose dependent rect. 2 1
112 64.41 precipitation 0.1 30 < th dose dependent rect. 2 1
121 64.56 atmosphere 1015.0 30 < th dose dependent rect. 2 1
123 64.65 temperature 30.0 30 < th dose dependent rect. 2 1
125 64.68 wind 1.0 30 > th dose independent rect. 2 1
131 64.85 precipitation 0.1 30 < th dose independent rect. 3 23
132 64.85 precipitation 0.1 30 < th dose dependent rect. 3 23
209 67.23 humidity 50.0 30 > th dose independent rect. 3 23
214 67.65 temperature 30.0 30 < th dose independent rect. 3 23
253 68.22 humidity 90.0 720 < th dose independent rect. 1 3
258 68.36 humidity 90.0 90 < th dose independent rect. 2 1
285 69.24 atmosphere 1000.0 720 > th dose independent rect. 3 8
294 69.36 humidity 90.0 720 > th dose independent rect. 3 1
305 69.52 wind 9.0 30 < th dose dependent rect. 3 23
322 69.72 atmosphere 995.0 720 > th dose independent rect. 23 16
323 69.73 wind 9.0 720 < th dose independent rect. 3 8
330 69.80 temperature 10.0 720 > th dose independent rect. 15 8
331 69.80 precipitation 0.1 720 < th dose independent rect. 15 8
332 69.80 temperature 10.0 720 > th dose independent rect. 23 16
333 69.80 precipitation 0.1 720 < th dose dependent rect. 15 8
350 70.02 temperature 10.0 720 > th dose independent rect. 3 8
352 70.02 temperature 10.0 720 > th dose independent rect. 11 16
353 70.03 humidity 90.0 90 < th dose independent rect. 1 4
358 70.06 wind 7.0 10 < th dose independent rect. 14 12
360 70.07 atmosphere 1015.0 720 < th dose independent rect. 3 8
365 70.16 atmosphere 995.0 1440 > th dose independent rect. 3 12
370 70.20 humidity 50.0 720 > th dose independent rect. 3 8
372 70.22 wind 9.0 720 < th dose independent rect. 23 16
387 70.35 atmosphere 1015.0 30 < th dose independent rect. 3 23
392 70.39 precipitation 0.1 720 < th dose independent rect. 23 16
395 70.39 precipitation 0.1 720 < th dose dependent rect. 23 16
401 70.43 precipitation 0.1 720 < th dose independent rect. 3 8
403 70.43 precipitation 0.1 720 < th dose dependent rect. 3 8
410 70.46 temperature 10.0 30 > th dose dependent rect. 3 23
412 70.48 atmosphere 1000.0 90 < th dose dependent rect. 6 3
415 70.52 humidity 80.0 720 > th dose dependent rect. 3 1
417 70.52 temperature 25.0 720 > th dose dependent rect. 3 5
455 70.63 atmosphere 995.0 720 > th dose independent rect. 15 8
457 70.64 precipitation 0.1 720 < th dose independent rect. 11 16
458 70.64 precipitation 0.1 720 < th dose dependent rect. 11 16
467 70.71 wind 1.0 10 < th dose independent rect. 13 14
473 70.75 wind 1.0 10 < th dose independent rect. 17 10
480 70.77 wind 1.0 10 < th dose independent rect. 21 6
485 70.78 radiation 40.0 720 < th dose independent rect. 15 8
492 70.80 atmosphere 1000.0 10 > th dose independent rect. 2 12
493 70.80 atmosphere 995.0 720 > th dose independent rect. 11 16
500 70.86 humidity 90.0 720 < th dose dependent rect. 24 2
513 70.93 atmosphere 1000.0 90 < th dose independent rect. 6 1
514 70.93 atmosphere 1000.0 10 < th dose independent rect. 7 1
543 70.93 atmosphere 1000.0 10 < th dose dependent rect. 7 1
577 71.00 atmosphere 1000.0 720 > th dose independent rect. 3 6
633 71.21 radiation 40.0 30 < th dose independent rect. 14 12
645 71.24 atmosphere 995.0 30 > th dose dependent rect. 3 23
646 71.25 wind 1.0 10 < th dose independent rect. 6 21
682 71.29 wind 1.0 10 < th dose independent rect. 8 19
692 71.32 atmosphere 1000.0 10 > th dose independent rect. 14 12
701 71.35 humidity 90.0 10 > th dose independent rect. 24 3
702 71.35 radiation 40.0 90 < th dose independent rect. 1 12
713 71.38 temperature 25.0 30 > th dose dependent rect. 14 21
736 71.46 temperature 10.0 10 > th dose independent rect. 2 12
738 71.46 temperature 10.0 10 > th dose independent rect. 14 12
740 71.46 atmosphere 1015.0 10 < th dose independent rect. 2 12
745 71.47 humidity 60.0 10 > th dose independent rect. 14 12
760 71.50 radiation 1.0 10 < th dose dependent rect. 2 14
782 71.56 temperature 25.0 720 > th dose independent rect. 3 5
787 71.57 wind 9.0 1440 < th dose independent rect. 3 3
788 71.57 temperature 10.0 1440 > th dose independent rect. 3 3
791 71.57 temperature 30.0 1440 < th dose independent rect. 3 3
795 71.57 humidity 50.0 1440 > th dose independent rect. 3 3
804 71.57 atmosphere 995.0 1440 > th dose independent rect. 3 3
805 71.57 radiation 20.0 1440 < th dose independent rect. 3 3
816 71.57 temperature 10.0 1440 > th dose independent rect. 6 21
820 71.57 wind 9.0 10 > th dose dependent rect. 15 3
823 71.57 radiation 1.0 30 < th dose dependent rect. 2 12
829 71.58 wind 9.0 90 > th dose dependent rect. 16 1
836 71.59 atmosphere 995.0 720 > th dose independent rect. 15 23
838 71.60 wind 9.0 90 > th dose independent rect. 16 2
840 71.60 radiation 1.0 30 < th dose independent rect. 2 12
842 71.60 atmosphere 1000.0 720 > th dose independent rect. 21 18
855 71.62 humidity 80.0 14400 < th dose dependent rect. 2 7
858 71.63 humidity 90.0 720 < th dose independent rect. 24 12
881 71.65 precipitation 0.1 720 < th dose independent rect. 14 1
889 71.65 precipitation 0.1 10 < th dose independent rect. 2 12
890 71.65 precipitation 0.1 10 < th dose independent rect. 14 12
891 71.65 atmosphere 1000.0 10 > th dose independent rect. 2 14
893 71.65 precipitation 0.1 720 < th dose dependent rect. 14 1
895 71.65 precipitation 0.1 10 < th dose dependent rect. 2 12
896 71.65 precipitation 0.1 10 < th dose dependent rect. 14 12
908 71.67 wind 9.0 720 < th dose dependent rect. 2 1
915 71.68 atmosphere 1000.0 720 > th dose independent rect. 21 9
916 71.68 atmosphere 995.0 720 > th dose independent rect. 3 23
963 71.71 wind 9.0 720 < th dose independent rect. 14 1
982 71.72 radiation 1.0 30 < th dose dependent rect. 2 10
984 71.72 temperature 25.0 10 > th dose dependent rect. 16 19
985 71.73 temperature 10.0 720 > th dose independent rect. 14 1
986 71.73 atmosphere 1015.0 720 < th dose independent rect. 14 1