Os01g0962000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0962000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.81 | 0.39 | 8.79 | 0.318 | 0.204 | -0.521 | 0.745 | 4.02 | 0.446 | 3.22 | 22.1 | 460 | -- | -- |
| 77.57 | 0.41 | 8.89 | -0.432 | 0.189 | -0.289 | 0.366 | -- | 0.219 | 1.85 | 23.9 | 438 | -- | -- |
| 69.8 | 0.389 | 8.79 | 0.302 | 0.287 | -0.409 | -- | 3.48 | 0.434 | 3.44 | 21.73 | 733 | -- | -- |
| 77.19 | 0.409 | 8.89 | -0.487 | 0.233 | -0.221 | -- | -- | 0.191 | 4.55 | 25.86 | 267 | -- | -- |
| 72.41 | 0.396 | 8.79 | 0.283 | -- | -0.644 | -- | 3.96 | 0.46 | -- | 22.7 | 465 | -- | -- |
| 77.87 | 0.414 | 8.89 | -0.523 | 0.329 | -- | -0.00794 | -- | 0.183 | 4.59 | -- | -- | -- | -- |
| 77.87 | 0.413 | 8.89 | -0.523 | 0.329 | -- | -- | -- | 0.183 | 4.58 | -- | -- | -- | -- |
| 79.12 | 0.414 | 8.88 | -0.448 | -- | -0.406 | -- | -- | 0.214 | -- | 25.2 | 252 | -- | -- |
| 83.3 | 0.425 | 8.88 | -- | 0.199 | -0.292 | -- | -- | 0.253 | 3.71 | 25.13 | 422 | -- | -- |
| 83.64 | 0.427 | 8.89 | -0.51 | -- | -- | -- | -- | 0.191 | -- | -- | -- | -- | -- |
| 85.08 | 0.431 | 8.87 | -- | 0.319 | -- | -- | -- | 0.241 | 4.63 | -- | -- | -- | -- |
| 84.34 | 0.428 | 8.87 | -- | -- | -0.468 | -- | -- | 0.27 | -- | 25.03 | 252 | -- | -- |
| 90.51 | 0.444 | 8.88 | -- | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.19 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 2 | 67.29 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 5 | 67.48 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 9 | 67.55 | humidity | 80 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 14 | 67.63 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 98 | 68.71 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 104 | 68.81 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 110 | 68.90 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 111 | 68.90 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 112 | 68.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 115 | 68.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 3 |
| 117 | 69.02 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 131 | 69.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 135 | 69.20 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 139 | 69.22 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 144 | 69.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 151 | 69.32 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 22 |
| 163 | 69.41 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 179 | 69.43 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 192 | 69.47 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 196 | 69.49 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 212 | 69.56 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 215 | 69.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 291 | 69.83 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 300 | 69.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 310 | 69.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 313 | 69.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 326 | 69.91 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 335 | 69.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 20 |
| 482 | 70.24 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 488 | 70.25 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 489 | 70.25 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 504 | 70.27 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 509 | 70.28 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 518 | 70.29 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 537 | 70.33 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 539 | 70.33 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 550 | 70.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 551 | 70.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 564 | 70.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 680 | 70.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 14 |
| 683 | 70.57 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 698 | 70.59 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 701 | 70.60 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 702 | 70.60 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 705 | 70.61 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 709 | 70.61 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 724 | 70.63 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 17 |
| 737 | 70.65 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 16 |
| 764 | 70.70 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 814 | 70.77 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 834 | 70.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 844 | 70.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 10 |
| 849 | 70.82 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 857 | 70.83 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 878 | 70.84 | wind | 1 | 43200 | < th | dose dependent | rect. | 15 | 11 |
| 890 | 70.87 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 936 | 70.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 946 | 70.93 | temperature | 20 | 10 | > th | dose dependent | sin | 16 | NA |
| 967 | 70.95 | temperature | 20 | 270 | > th | dose dependent | sin | 20 | NA |
| 979 | 70.96 | temperature | 20 | 90 | > th | dose dependent | sin | 17 | NA |
| 990 | 70.97 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 993 | 70.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 4 |