Os01g0961300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0961300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 163.34 | 0.6 | 5.26 | 0.496 | 0.874 | 0.914 | -0.183 | -2.15 | 0.324 | 16.2 | 21.2 | 4112 | -- | -- |
| 169.65 | 0.607 | 5.17 | 0.876 | 0.91 | 1.31 | -0.185 | -- | 0.427 | 16.2 | 20.62 | 4139 | -- | -- |
| 163.37 | 0.595 | 5.26 | 0.49 | 0.869 | 0.913 | -- | -2.16 | 0.322 | 16.2 | 21.2 | 4253 | -- | -- |
| 169.58 | 0.607 | 5.17 | 0.893 | 0.879 | 1.29 | -- | -- | 0.428 | 16.2 | 20.7 | 4139 | -- | -- |
| 202.66 | 0.663 | 5.25 | 0.45 | -- | 0.924 | -- | -2.12 | 0.298 | -- | 21.2 | 4722 | -- | -- |
| 201.62 | 0.666 | 5.08 | 1.69 | 0.836 | -- | 0.021 | -- | 0.815 | 16.3 | -- | -- | -- | -- |
| 201.62 | 0.665 | 5.08 | 1.69 | 0.836 | -- | -- | -- | 0.815 | 16.3 | -- | -- | -- | -- |
| 203.76 | 0.665 | 5.16 | 0.311 | -- | 1.53 | -- | -- | 0.367 | -- | 19.72 | 19039 | -- | -- |
| 162.62 | 0.594 | 5.21 | -- | 0.851 | 1.81 | -- | -- | 0.239 | 16.3 | 18.8 | 20259 | -- | -- |
| 239.25 | 0.723 | 5.08 | 1.66 | -- | -- | -- | -- | 0.793 | -- | -- | -- | -- | -- |
| 276.9 | 0.778 | 5.13 | -- | 0.804 | -- | -- | -- | 0.627 | 16.3 | -- | -- | -- | -- |
| 201.31 | 0.661 | 5.2 | -- | -- | 1.82 | -- | -- | 0.24 | -- | 18.79 | 20485 | -- | -- |
| 311.67 | 0.824 | 5.12 | -- | -- | -- | -- | -- | 0.609 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.58 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 3 | 158.29 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 6 | 158.32 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 17 | 158.85 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 24 | 159.11 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 10 | NA |
| 28 | 159.34 | atmosphere | 995 | 43200 | < th | dose independent | sin | 8 | NA |
| 42 | 159.70 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 44 | 159.72 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 45 | 159.72 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 51 | 159.86 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 52 | 159.87 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 53 | 159.89 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 54 | 159.96 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 69 | 160.19 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 70 | 160.20 | atmosphere | 995 | 43200 | > th | dose independent | sin | 8 | NA |
| 80 | 160.42 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 81 | 160.45 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 96 | 160.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 10 |
| 105 | 160.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 111 | 160.75 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 10 |
| 158 | 161.14 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 166 | 161.19 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 168 | 161.19 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 258 | 161.80 | temperature | 20 | 4320 | < th | dose independent | sin | 11 | NA |
| 264 | 161.83 | temperature | 20 | 4320 | > th | dose independent | sin | 11 | NA |
| 272 | 161.85 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 276 | 161.86 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 333 | 162.10 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 358 | 162.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 415 | 162.40 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 459 | 162.57 | temperature | 25 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 470 | 162.60 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 471 | 162.61 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 8 |
| 495 | 162.67 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 503 | 162.71 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 514 | 162.74 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 540 | 162.79 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 584 | 162.89 | temperature | 25 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 631 | 163.01 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 781 | 163.34 | temperature | 20 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 782 | 163.34 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 785 | 163.35 | temperature | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 807 | 163.38 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 908 | 163.64 | temperature | 20 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 928 | 163.69 | temperature | 20 | 14400 | > th | dose independent | rect. | 5 | 4 |