Os01g0961000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0961000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.15 | 0.544 | 8.44 | 0.615 | 1.2 | -0.466 | -1.29 | 2.1 | 0.605 | 8.36 | 0.4299 | 1450 | -- | -- |
| 135.11 | 0.541 | 8.43 | 0.849 | 1.24 | -0.808 | -1.51 | -- | 0.697 | 8.36 | 0.1703 | 1450 | -- | -- |
| 137.65 | 0.546 | 8.44 | 0.566 | 1.14 | -0.623 | -- | 2.34 | 0.609 | 8.12 | 0.3894 | 1552 | -- | -- |
| 139.94 | 0.551 | 8.41 | 0.786 | 1.13 | -0.95 | -- | -- | 0.681 | 8.28 | 0.18 | 1477 | -- | -- |
| 185.43 | 0.638 | 8.42 | 0.975 | -- | -0.62 | -- | 1.02 | 0.754 | -- | 0.68 | 1543 | -- | -- |
| 144.91 | 0.564 | 8.39 | 1.05 | 1.22 | -- | -1.38 | -- | 0.751 | 8.45 | -- | -- | -- | -- |
| 150.98 | 0.575 | 8.39 | 1 | 1.22 | -- | -- | -- | 0.752 | 8.49 | -- | -- | -- | -- |
| 192.16 | 0.648 | 8.42 | 0.987 | -- | -0.615 | -- | -- | 0.769 | -- | 0.18 | 1477 | -- | -- |
| 152.72 | 0.576 | 8.4 | -- | 1.19 | -1.34 | -- | -- | 0.677 | 8.16 | 9.299e-06 | 1468 | -- | -- |
| 234.29 | 0.715 | 8.42 | 1.01 | -- | -- | -- | -- | 0.764 | -- | -- | -- | -- | -- |
| 177.59 | 0.623 | 8.41 | -- | 1.22 | -- | -- | -- | 0.64 | 8.43 | -- | -- | -- | -- |
| 214.68 | 0.685 | 8.45 | -- | -- | -0.651 | -- | -- | 0.614 | -- | 9.299e-06 | 1468 | -- | -- |
| 261.2 | 0.754 | 8.44 | -- | -- | -- | -- | -- | 0.652 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 2 | 119.82 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 3 | 119.91 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 4 | 120.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 6 | 120.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 10 | 120.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 11 | 120.70 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 15 | 120.81 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 17 | 120.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 18 | 120.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 22 | 120.94 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 31 | 121.39 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 37 | 121.60 | humidity | 70 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 39 | 121.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 40 | 121.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 41 | 121.68 | humidity | 60 | 14400 | < th | dose dependent | rect. | 13 | 4 |
| 62 | 122.24 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 63 | 122.28 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 69 | 122.38 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 21 |
| 73 | 122.40 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 82 | 122.48 | humidity | 70 | 14400 | < th | dose dependent | rect. | 15 | 20 |
| 88 | 122.52 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 98 | 122.62 | humidity | 70 | 14400 | < th | dose dependent | rect. | 20 | 15 |
| 99 | 122.64 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 101 | 122.64 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 103 | 122.64 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 154 | 122.64 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 156 | 122.64 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 158 | 122.64 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 209 | 122.69 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 218 | 122.73 | humidity | 60 | 14400 | < th | dose dependent | rect. | 10 | 7 |
| 228 | 122.81 | humidity | 70 | 14400 | < th | dose dependent | sin | 10 | NA |
| 231 | 122.82 | humidity | 70 | 14400 | < th | dose dependent | rect. | 6 | 5 |
| 243 | 122.86 | humidity | 60 | 14400 | < th | dose dependent | rect. | 13 | 19 |
| 245 | 122.88 | humidity | 60 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 258 | 122.94 | humidity | 60 | 14400 | < th | dose dependent | rect. | 13 | 8 |
| 274 | 122.98 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 21 |
| 275 | 122.99 | humidity | 60 | 14400 | < th | dose dependent | rect. | 7 | 10 |
| 286 | 123.01 | humidity | 60 | 14400 | < th | dose independent | sin | 7 | NA |
| 290 | 123.03 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 17 |
| 291 | 123.03 | humidity | 80 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 307 | 123.10 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 318 | 123.11 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 21 |
| 328 | 123.14 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 380 | 123.24 | humidity | 60 | 14400 | < th | dose dependent | sin | 18 | NA |
| 409 | 123.30 | humidity | 70 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 438 | 123.35 | humidity | 60 | 14400 | > th | dose independent | sin | 11 | NA |
| 446 | 123.36 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 8 |
| 470 | 123.38 | humidity | 60 | 14400 | < th | dose dependent | rect. | 10 | 22 |
| 480 | 123.42 | humidity | 60 | 14400 | < th | dose independent | no | NA | NA |
| 619 | 123.53 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 16 |
| 673 | 123.63 | humidity | 60 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 687 | 123.63 | humidity | 60 | 14400 | < th | dose dependent | no | NA | NA |
| 757 | 123.64 | humidity | 60 | 14400 | > th | dose independent | rect. | 1 | 11 |
| 759 | 123.64 | humidity | 60 | 14400 | > th | dose independent | rect. | 23 | 13 |
| 881 | 123.81 | humidity | 80 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 972 | 123.93 | humidity | 60 | 14400 | > th | dose independent | rect. | 10 | 2 |