Os01g0960400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0960400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.26 | 0.608 | 8.03 | -0.144 | 1.47 | -0.613 | 1.62 | 2.26 | 0.405 | 17.3 | 10 | 1337 | -- | -- |
| 176.88 | 0.619 | 8.08 | -0.417 | 1.43 | -0.52 | 1.62 | -- | 0.295 | 17.3 | 9.995 | 1330 | -- | -- |
| 173.51 | 0.613 | 8.03 | -0.152 | 1.48 | -0.611 | -- | 2.25 | 0.41 | 17.3 | 10 | 1284 | -- | -- |
| 182.6 | 0.629 | 8.07 | -0.454 | 1.47 | -0.53 | -- | -- | 0.296 | 17.2 | -3.331 | 1367 | -- | -- |
| 287.94 | 0.79 | 8.01 | -0.192 | -- | -0.708 | -- | 2.04 | 0.394 | -- | 10 | 1342 | -- | -- |
| 186.89 | 0.641 | 8.1 | -0.54 | 1.49 | -- | 1.53 | -- | 0.161 | 17.1 | -- | -- | -- | -- |
| 192.73 | 0.65 | 8.1 | -0.537 | 1.5 | -- | -- | -- | 0.169 | 17 | -- | -- | -- | -- |
| 295.75 | 0.801 | 8.06 | -0.486 | -- | -0.623 | -- | -- | 0.263 | -- | 9.136 | 1359 | -- | -- |
| 187.93 | 0.638 | 8.06 | -- | 1.48 | -0.58 | -- | -- | 0.353 | 17.2 | -5.649 | 1358 | -- | -- |
| 311.26 | 0.824 | 8.08 | -0.592 | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
| 200.33 | 0.662 | 8.08 | -- | 1.51 | -- | -- | -- | 0.228 | 17 | -- | -- | -- | -- |
| 301.4 | 0.809 | 8.03 | -- | -- | -0.676 | -- | -- | 0.354 | -- | 10 | 1361 | -- | -- |
| 320.5 | 0.836 | 8.07 | -- | -- | -- | -- | -- | 0.196 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.19 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 2 | 153.36 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 11 |
| 9 | 154.25 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 19 | 155.27 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 26 | 155.90 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 27 | 155.92 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 5 |
| 28 | 156.04 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 34 | 156.47 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 3 |
| 43 | 156.94 | wind | 5 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 46 | 157.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 48 | 157.46 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 49 | 157.50 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 50 | 157.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 55 | 157.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 56 | 157.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 63 | 158.00 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 71 | 158.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 72 | 158.13 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 5 |
| 77 | 158.25 | wind | 5 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 84 | 158.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 94 | 158.53 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 7 |
| 145 | 159.67 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 159 | 160.01 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 18 |
| 188 | 160.42 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 6 |
| 189 | 160.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 190 | 160.44 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 242 | 161.14 | humidity | 90 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 269 | 161.34 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 298 | 161.59 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 321 | 161.76 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 348 | 161.95 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 356 | 162.03 | humidity | 70 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 383 | 162.27 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 388 | 162.32 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 400 | 162.41 | humidity | 60 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 404 | 162.44 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 408 | 162.46 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 423 | 162.51 | humidity | 90 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 436 | 162.61 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 449 | 162.70 | radiation | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 459 | 162.73 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 462 | 162.75 | humidity | 70 | 14400 | > th | dose dependent | rect. | 15 | 14 |
| 464 | 162.77 | humidity | 70 | 14400 | > th | dose dependent | rect. | 14 | 17 |
| 467 | 162.78 | humidity | 70 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 469 | 162.79 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 491 | 162.86 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 493 | 162.86 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 495 | 162.86 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 549 | 162.86 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 553 | 162.86 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 608 | 162.88 | humidity | 70 | 14400 | > th | dose dependent | sin | 13 | NA |
| 624 | 162.96 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 638 | 162.99 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 641 | 163.00 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 645 | 163.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 665 | 163.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 726 | 163.33 | humidity | 70 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 738 | 163.39 | radiation | 40 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 774 | 163.47 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 787 | 163.52 | humidity | 90 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 844 | 163.67 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 896 | 163.81 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 908 | 163.84 | humidity | 60 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 917 | 163.86 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 12 |
| 924 | 163.88 | humidity | 90 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 946 | 163.92 | radiation | 30 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 960 | 163.97 | humidity | 80 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 971 | 163.99 | humidity | 70 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 980 | 164.02 | radiation | 30 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 987 | 164.03 | radiation | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 993 | 164.05 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 20 |