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Os01g0960000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.39 (0.0155) R2 : 0.00696
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0585 (0.0327) R2dN8 : 0.00899 R2N8 : 0.00696
σ : 0.293
deviance : 39.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.95 0.193 9.36 0.625 0.35 -0.379 -0.199 -0.644 0.136 10.4 65.69 8054 -- --
17.55 0.195 9.36 0.624 0.352 -0.385 -0.143 -- 0.129 10.5 62.8 8012 -- --
17.09 0.193 9.36 0.626 0.348 -0.377 -- -0.604 0.133 10.5 64.06 8054 -- --
17.64 0.196 9.37 0.627 0.352 -0.379 -- -- 0.126 10.6 62.65 7950 -- --
24.51 0.231 9.37 0.587 -- -0.472 -- -0.615 0.13 -- 66.79 8036 -- --
19.82 0.209 9.36 0.652 0.373 -- -0.155 -- 0.131 10.4 -- -- -- --
19.91 0.209 9.36 0.646 0.374 -- -- -- 0.131 10.5 -- -- -- --
25.08 0.233 9.37 0.588 -- -0.46 -- -- 0.151 -- 70.73 8036 -- --
23.77 0.227 9.38 -- 0.385 -0.537 -- -- 0.0459 10.3 66 31004 -- --
28.47 0.249 9.37 0.64 -- -- -- -- 0.129 -- -- -- -- --
30.93 0.26 9.38 -- 0.37 -- -- -- 0.059 10.4 -- -- -- --
31.68 0.262 9.39 -- -- -0.574 -- -- 0.0658 -- 67 31061 -- --
39.28 0.293 9.39 -- -- -- -- -- 0.0585 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.06 precipitation 0.1 14400 > th dose independent rect. 17 1
2 17.06 precipitation 0.1 14400 < th dose independent rect. 17 1
3 17.06 precipitation 0.1 14400 < th dose dependent rect. 17 1
4 17.12 precipitation 0.1 14400 > th dose dependent rect. 16 2
8 17.18 radiation 30.0 43200 > th dose independent rect. 11 1
12 17.26 wind 9.0 43200 < th dose independent rect. 12 2
16 17.28 radiation 10.0 43200 < th dose independent rect. 9 1
17 17.28 radiation 20.0 43200 < th dose dependent rect. 9 1
26 17.31 wind 9.0 43200 > th dose independent rect. 12 2
29 17.32 radiation 10.0 43200 < th dose dependent rect. 7 3
31 17.33 wind 9.0 43200 > th dose dependent rect. 11 3
41 17.36 radiation 40.0 43200 < th dose dependent rect. 11 1
43 17.37 radiation 30.0 43200 < th dose independent rect. 11 1
62 17.41 humidity 50.0 4320 < th dose independent rect. 15 1
64 17.41 radiation 10.0 43200 > th dose dependent rect. 11 1
84 17.44 humidity 50.0 4320 < th dose independent rect. 14 3
113 17.46 wind 1.0 43200 < th dose dependent rect. 24 2
124 17.47 humidity 50.0 4320 < th dose dependent sin 11 NA
145 17.49 humidity 60.0 14400 < th dose independent rect. 16 18
159 17.51 humidity 50.0 4320 < th dose independent sin 15 NA
189 17.53 humidity 60.0 14400 > th dose independent rect. 17 17
200 17.54 precipitation 0.1 4320 < th dose independent rect. 12 6
203 17.54 precipitation 0.1 4320 < th dose dependent rect. 12 6
220 17.57 humidity 80.0 1440 < th dose independent rect. 8 2
225 17.57 precipitation 0.1 4320 < th dose independent rect. 9 9
228 17.57 precipitation 0.1 4320 < th dose dependent rect. 9 9
237 17.58 precipitation 0.1 4320 > th dose independent rect. 9 9
238 17.58 radiation 20.0 43200 > th dose independent rect. 14 22
243 17.59 radiation 20.0 43200 > th dose independent rect. 14 1
247 17.59 precipitation 0.1 4320 > th dose independent rect. 6 12
248 17.59 radiation 20.0 43200 > th dose independent rect. 17 19
276 17.60 radiation 40.0 43200 > th dose independent rect. 14 22
302 17.61 precipitation 0.1 4320 < th dose independent rect. 6 12
318 17.61 precipitation 0.1 4320 < th dose dependent rect. 6 12
320 17.62 wind 1.0 43200 < th dose independent rect. 24 2
348 17.63 humidity 50.0 4320 > th dose independent rect. 13 7
365 17.63 humidity 50.0 4320 > th dose independent rect. 13 20
373 17.63 wind 1.0 43200 < th dose dependent rect. 5 21
380 17.64 humidity 50.0 4320 > th dose independent rect. 13 5
396 17.64 humidity 50.0 4320 > th dose independent rect. 13 18
407 17.65 humidity 60.0 14400 < th dose independent sin 11 NA
519 17.67 humidity 50.0 4320 > th dose independent sin 15 NA
563 17.68 humidity 50.0 4320 < th dose independent no NA NA
565 17.68 humidity 80.0 1440 > th dose independent rect. 8 2
713 17.68 humidity 60.0 1440 > th dose dependent rect. 10 1
724 17.69 radiation 40.0 43200 > th dose independent sin 7 NA
726 17.69 radiation 30.0 43200 > th dose independent sin 0 NA
734 17.69 humidity 70.0 14400 < th dose independent rect. 17 1
795 17.69 humidity 50.0 4320 < th dose dependent rect. 14 3
819 17.70 radiation 30.0 43200 > th dose independent sin 22 NA
824 17.70 wind 3.0 43200 > th dose independent rect. 2 1
841 17.70 wind 1.0 43200 < th dose independent rect. 5 8
902 17.71 wind 3.0 43200 < th dose independent rect. 2 1
927 17.71 precipitation 0.1 1440 < th dose independent rect. 16 10
965 17.71 wind 1.0 43200 < th dose dependent rect. 8 1
975 17.71 wind 1.0 43200 < th dose dependent rect. 5 8
977 17.71 precipitation 0.1 1440 < th dose dependent rect. 16 10
983 17.72 radiation 30.0 43200 > th dose independent no NA NA