Os01g0959900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0959900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.73 | 0.277 | 14.5 | -0.863 | 1.27 | 0.77 | -0.402 | -0.66 | -0.657 | 22.8 | 25.4 | 735 | -- | -- |
| 35.22 | 0.276 | 14.4 | -0.69 | 1.27 | 0.746 | -0.529 | -- | -0.591 | 22.9 | 25.7 | 706 | -- | -- |
| 35.29 | 0.277 | 14.5 | -0.904 | 1.28 | 0.766 | -- | -0.875 | -0.671 | 22.9 | 25.4 | 713 | -- | -- |
| 36.54 | 0.282 | 14.4 | -0.662 | 1.28 | 0.736 | -- | -- | -0.584 | 22.9 | 25.7 | 706 | -- | -- |
| 109.95 | 0.488 | 14.5 | -1.01 | -- | 1.5 | -- | -0.853 | -0.882 | -- | 25.7 | 784 | -- | -- |
| 52.4 | 0.339 | 14.4 | -0.47 | 1.6 | -- | -0.51 | -- | -0.325 | 22.4 | -- | -- | -- | -- |
| 53.46 | 0.342 | 14.4 | -0.449 | 1.61 | -- | -- | -- | -0.323 | 22.4 | -- | -- | -- | -- |
| 113.19 | 0.496 | 14.5 | -0.873 | -- | 1.51 | -- | -- | -0.837 | -- | 25.62 | 784 | -- | -- |
| 46.65 | 0.318 | 14.4 | -- | 1.44 | 0.558 | -- | -- | -0.497 | 23.2 | 25.45 | 469 | -- | -- |
| 211.41 | 0.679 | 14.4 | -0.423 | -- | -- | -- | -- | -0.318 | -- | -- | -- | -- | -- |
| 58.78 | 0.359 | 14.4 | -- | 1.6 | -- | -- | -- | -0.273 | 22.4 | -- | -- | -- | -- |
| 131.94 | 0.535 | 14.4 | -- | -- | 1.35 | -- | -- | -0.704 | -- | 25.52 | 777 | -- | -- |
| 216.13 | 0.686 | 14.3 | -- | -- | -- | -- | -- | -0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 2 | 34.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 4 | 34.78 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 18 |
| 6 | 34.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 7 | 34.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 8 |
| 28 | 34.95 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 20 |
| 31 | 34.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 124 | 35.16 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |
| 226 | 35.29 | temperature | 30 | 1440 | < th | dose dependent | sin | 23 | NA |
| 467 | 35.56 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 22 |
| 615 | 35.70 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 13 |
| 705 | 35.77 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 748 | 35.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 765 | 35.81 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 23 |
| 853 | 35.88 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 897 | 35.90 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 948 | 35.93 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 9 |