Os01g0959800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calcium-binding EF-hand domain containing protein.
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Os01g0959800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calcium-binding EF-hand domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.47 | 0.28 | 11.4 | 0.162 | 0.519 | -1.18 | 0.667 | -1.67 | 0.325 | 21.6 | 0.1889 | 14458 | -- | -- |
| 35.72 | 0.278 | 11.4 | -0.204 | 0.543 | -0.711 | 0.599 | -- | 0.314 | 21.8 | 0.5399 | 30500 | -- | -- |
| 35.76 | 0.279 | 11.4 | 0.151 | 0.35 | -1.35 | -- | -2.05 | 0.309 | 21.3 | 0.1 | 15489 | -- | -- |
| 36.3 | 0.281 | 11.4 | -0.273 | 0.492 | -0.799 | -- | -- | 0.268 | 21.4 | 0.109 | 30362 | -- | -- |
| 41.84 | 0.301 | 11.4 | 0.0771 | -- | -1.49 | -- | -2.12 | 0.307 | -- | 0.11 | 15437 | -- | -- |
| 49.68 | 0.33 | 11.4 | 0.31 | 0.51 | -- | 0.673 | -- | 0.447 | 21.7 | -- | -- | -- | -- |
| 51.24 | 0.335 | 11.4 | 0.287 | 0.514 | -- | -- | -- | 0.448 | 21.3 | -- | -- | -- | -- |
| 47.24 | 0.32 | 11.4 | -0.201 | -- | -1.03 | -- | -- | 0.281 | -- | 0.1701 | 15377 | -- | -- |
| 37.91 | 0.287 | 11.4 | -- | 0.453 | -0.694 | -- | -- | 0.259 | 21.4 | 0.33 | 29820 | -- | -- |
| 66.64 | 0.381 | 11.4 | 0.29 | -- | -- | -- | -- | 0.445 | -- | -- | -- | -- | -- |
| 53.41 | 0.342 | 11.4 | -- | 0.514 | -- | -- | -- | 0.416 | 21.3 | -- | -- | -- | -- |
| 47.29 | 0.32 | 11.4 | -- | -- | -0.929 | -- | -- | 0.289 | -- | 1.233 | 15441 | -- | -- |
| 68.85 | 0.387 | 11.4 | -- | -- | -- | -- | -- | 0.413 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.07 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 2 | 34.20 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 4 | 34.25 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 6 |
| 8 | 34.33 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 12 | 34.36 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 16 | 34.39 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 19 | 34.40 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 21 | 34.40 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 25 | 34.41 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 30 | 34.41 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 40 | 34.47 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 41 | 34.48 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 44 | 34.50 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 45 | 34.50 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 55 | 34.55 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 56 | 34.55 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 67 | 34.57 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 69 | 34.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 6 |
| 73 | 34.59 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 75 | 34.59 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 91 | 34.63 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 126 | 34.66 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 136 | 34.67 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 150 | 34.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 163 | 34.69 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 188 | 34.70 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 194 | 34.71 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 198 | 34.71 | atmosphere | 1000 | 43200 | > th | dose dependent | sin | 10 | NA |
| 220 | 34.72 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 242 | 34.73 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 243 | 34.73 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 286 | 34.75 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 289 | 34.75 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 293 | 34.75 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 346 | 34.77 | radiation | 10 | 43200 | < th | dose independent | sin | 12 | NA |
| 406 | 34.79 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 411 | 34.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 428 | 34.80 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 514 | 34.82 | atmosphere | 1000 | 43200 | > th | dose dependent | no | NA | NA |
| 543 | 34.82 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 4 | 23 |
| 544 | 34.82 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 559 | 34.83 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 580 | 34.83 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 2 | 22 |
| 609 | 34.84 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 610 | 34.84 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 611 | 34.84 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 669 | 34.86 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 8 | 15 |
| 691 | 34.86 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 19 |
| 773 | 34.89 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 784 | 34.89 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 17 |
| 803 | 34.90 | humidity | 60 | 43200 | < th | dose dependent | sin | 8 | NA |
| 804 | 34.90 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 805 | 34.90 | radiation | 30 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 864 | 34.92 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 920 | 34.94 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 946 | 34.94 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 961 | 34.94 | radiation | 30 | 43200 | < th | dose dependent | rect. | 21 | 10 |
| 971 | 34.95 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 17 | NA |