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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0959600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.59 (0.0365) R2 : 0.669
β1 : 1.28 (0.133) R2dD : 0.0689 R2D : 0.0596
β2 : 2.73 (0.0943) R2dC : 0.612 R2C : 0.602
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.11 (0.0778) R2dN8 : 0.00195 R2N8 : -0.00723
σ : 0.685
deviance : 214.02
__
_____
C
peak time of C : 19.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
198.11 0.661 5.44 2.33 2.54 -0.721 -0.765 13.1 0.176 19.2 30.8 677 -- --
203.65 0.665 5.56 1.21 2.65 0.541 -0.241 -- 0.219 19.1 31.09 852 -- --
198.41 0.656 5.47 2.29 2.58 -0.955 -- 15.2 0.175 19.2 30.7 497 -- --
203.98 0.665 5.57 1.17 2.62 0.582 -- -- 0.191 19.1 31.1 860 -- --
480.61 1.02 5.36 2.13 -- 0.418 -- 15.4 0.223 -- 31.3 578 -- --
213.81 0.686 5.59 1.27 2.73 -- -0.279 -- 0.111 19.1 -- -- -- --
214.02 0.685 5.59 1.28 2.73 -- -- -- 0.11 19.2 -- -- -- --
384.98 0.914 5.58 0.811 -- 2.31 -- -- -0.237 -- 28.2 517 -- --
238.86 0.72 5.59 -- 2.59 0.784 -- -- 0.0975 19.1 31.1 864 -- --
607.21 1.15 5.53 1.23 -- -- -- -- 0.0621 -- -- -- -- --
256.94 0.75 5.62 -- 2.72 -- -- -- -0.032 19.2 -- -- -- --
400.44 0.932 5.62 -- -- 2.44 -- -- -0.328 -- 28.22 551 -- --
646.8 1.19 5.56 -- -- -- -- -- -0.0738 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 191.28 temperature 30.0 270 < th dose independent rect. 5 14
5 193.03 temperature 30.0 720 > th dose independent rect. 18 19
11 193.71 temperature 30.0 720 > th dose independent sin 9 NA
13 193.74 temperature 30.0 720 > th dose dependent rect. 17 20
16 194.08 temperature 30.0 720 < th dose independent rect. 6 5
21 194.26 temperature 30.0 720 > th dose independent rect. 9 4
38 194.47 temperature 30.0 270 < th dose independent rect. 5 21
39 194.51 temperature 30.0 720 > th dose dependent rect. 8 5
56 194.60 temperature 30.0 720 > th dose dependent sin 9 NA
57 194.60 temperature 30.0 720 > th dose dependent rect. 11 1
82 194.99 temperature 30.0 720 < th dose independent rect. 21 15
84 195.10 atmosphere 1000.0 30 > th dose independent rect. 7 16
123 195.54 atmosphere 995.0 10 > th dose dependent rect. 7 16
145 195.71 temperature 30.0 90 < th dose independent rect. 7 20
177 196.34 radiation 40.0 90 < th dose independent rect. 7 20
185 196.57 atmosphere 1000.0 10 > th dose independent rect. 7 21
190 196.64 wind 7.0 30 < th dose independent rect. 12 19
192 196.65 temperature 15.0 4320 > th dose independent rect. 8 5
197 196.81 radiation 40.0 270 < th dose independent rect. 5 21
217 197.01 wind 7.0 270 < th dose independent rect. 9 22
223 197.16 temperature 20.0 720 > th dose dependent rect. 12 1
225 197.18 temperature 30.0 270 < th dose independent rect. 21 23
227 197.25 temperature 30.0 270 < th dose independent rect. 14 21
248 197.51 atmosphere 1000.0 30 > th dose independent rect. 7 5
253 197.64 temperature 10.0 720 > th dose dependent rect. 11 4
254 197.72 temperature 30.0 270 < th dose independent sin 23 NA
257 197.75 temperature 30.0 270 < th dose independent rect. 14 11
285 197.88 temperature 30.0 270 < th dose dependent rect. 6 14
309 197.99 precipitation 0.1 10 < th dose independent rect. 12 19
310 197.99 precipitation 0.1 10 < th dose dependent rect. 12 19
312 198.02 atmosphere 1015.0 10 < th dose independent rect. 7 21
313 198.05 radiation 20.0 270 < th dose independent rect. 5 21
315 198.09 wind 1.0 10 > th dose independent rect. 7 5
319 198.11 temperature 15.0 1440 > th dose dependent rect. 15 5
345 198.24 temperature 15.0 1440 > th dose dependent rect. 18 1
359 198.33 radiation 40.0 90 < th dose dependent rect. 7 20
388 198.44 radiation 30.0 720 < th dose independent rect. 6 5
400 198.48 wind 1.0 1440 < th dose independent rect. 3 3
403 198.48 temperature 10.0 10 > th dose dependent rect. 12 19
409 198.50 radiation 40.0 90 < th dose independent rect. 7 5
426 198.55 temperature 30.0 1440 < th dose dependent rect. 18 1
427 198.55 temperature 10.0 270 > th dose dependent rect. 10 19
436 198.59 temperature 30.0 720 < th dose independent rect. 16 23
474 198.74 temperature 30.0 1440 < th dose dependent rect. 16 4
482 198.78 temperature 20.0 30 > th dose independent rect. 7 5
506 198.84 temperature 25.0 30 > th dose dependent rect. 12 10
516 198.88 temperature 10.0 720 > th dose dependent rect. 4 18
522 198.91 radiation 40.0 270 < th dose dependent rect. 5 21
540 198.95 temperature 20.0 720 > th dose dependent rect. 4 17
544 198.98 temperature 10.0 30 > th dose independent rect. 7 5
547 198.98 atmosphere 1015.0 30 < th dose independent rect. 7 5
548 198.98 precipitation 0.1 30 < th dose independent rect. 7 5
549 198.98 temperature 10.0 30 > th dose independent rect. 12 19
554 198.98 precipitation 0.1 30 < th dose dependent rect. 7 5
558 198.99 atmosphere 995.0 1440 > th dose independent rect. 8 5
559 198.99 temperature 10.0 1440 > th dose independent rect. 13 19
562 198.99 atmosphere 995.0 30 > th dose dependent rect. 7 5
597 199.06 temperature 20.0 1440 > th dose dependent sin 20 NA
608 199.08 temperature 30.0 10 < th dose dependent rect. 4 3
626 199.11 wind 9.0 30 < th dose independent rect. 7 5
631 199.12 temperature 30.0 10 < th dose independent rect. 7 21
639 199.13 temperature 20.0 720 > th dose dependent rect. 6 15
650 199.17 radiation 1.0 30 > th dose independent rect. 7 5
727 199.31 temperature 25.0 30 > th dose dependent rect. 12 8
756 199.34 wind 1.0 1440 > th dose independent rect. 3 3
773 199.36 temperature 25.0 10 > th dose dependent rect. 12 19
784 199.38 temperature 30.0 270 > th dose dependent rect. 9 10
802 199.39 temperature 30.0 270 > th dose dependent no NA NA
948 199.46 humidity 50.0 14400 < th dose dependent rect. 16 1
958 199.48 precipitation 0.1 270 < th dose independent rect. 9 22
969 199.48 precipitation 0.1 270 < th dose dependent rect. 9 22
979 199.49 atmosphere 995.0 10 > th dose dependent rect. 7 21
1000 199.53 atmosphere 1015.0 270 < th dose independent rect. 15 10