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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0958200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Quinonprotein alcohol dehydrogenase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0264) R2 : 0.00237
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0578 (0.0555) R2dN8 : 0.00306 R2N8 : 0.00237
σ : 0.497
deviance : 113.29
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
99.89 0.47 3.15 -0.345 0.144 -0.606 -0.637 2.36 0.011 10.8 1.1 16 -- --
104.57 0.476 3.14 -0.255 0.139 -0.424 -0.599 -- 0.017 9.56 1 16 -- --
101.55 0.469 3.15 -0.366 0.149 -0.613 -- 2.2 0.0113 11.2 1.1 16 -- --
105.72 0.479 3.13 -0.277 0.157 -0.435 -- -- 0.0334 10.4 1 16 -- --
102.91 0.472 3.15 -0.367 -- -0.589 -- 2.22 0.00978 -- 1.086 16 -- --
108.75 0.489 3.13 -0.202 0.186 -- -0.642 -- 0.0312 8.4 -- -- -- --
110.02 0.491 3.13 -0.223 0.191 -- -- -- 0.0307 7.88 -- -- -- --
107.15 0.482 3.13 -0.278 -- -0.435 -- -- 0.0347 -- 1.042 16 -- --
107.7 0.483 3.12 -- 0.155 -0.402 -- -- 0.0649 10.4 1.021 14 -- --
112.01 0.495 3.13 -0.221 -- -- -- -- 0.0333 -- -- -- -- --
111.32 0.494 3.12 -- 0.19 -- -- -- 0.0555 7.97 -- -- -- --
109.15 0.487 3.12 -- -- -0.398 -- -- 0.0649 -- 1.02 16 -- --
113.29 0.497 3.13 -- -- -- -- -- 0.0578 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.32 atmosphere 1015.0 30 < th dose dependent rect. 2 1
2 83.34 wind 1.0 30 < th dose independent rect. 2 1
3 83.35 wind 3.0 30 < th dose dependent rect. 2 1
10 83.38 temperature 10.0 30 > th dose dependent rect. 2 1
12 83.39 temperature 10.0 30 > th dose independent rect. 2 1
14 83.39 temperature 30.0 30 < th dose independent rect. 2 1
15 83.39 humidity 50.0 30 > th dose independent rect. 2 1
18 83.39 atmosphere 995.0 30 > th dose independent rect. 2 1
19 83.39 atmosphere 1010.0 30 < th dose independent rect. 2 1
21 83.39 radiation 1.0 30 < th dose independent rect. 2 1
26 83.39 precipitation 0.1 30 < th dose independent rect. 2 1
27 83.39 temperature 10.0 30 > th dose independent rect. 3 23
29 83.39 humidity 50.0 30 > th dose dependent rect. 2 1
32 83.39 atmosphere 1005.0 30 > th dose dependent rect. 2 1
33 83.39 radiation 1.0 30 < th dose dependent rect. 2 1
38 83.39 precipitation 0.1 30 < th dose dependent rect. 2 1
45 83.45 temperature 30.0 30 < th dose dependent rect. 2 1
46 83.46 atmosphere 995.0 30 > th dose dependent rect. 2 1
49 83.52 atmosphere 1005.0 30 > th dose independent rect. 2 1
64 83.75 wind 1.0 30 > th dose independent rect. 2 1
103 84.26 wind 9.0 30 < th dose independent rect. 3 23
106 85.19 atmosphere 995.0 30 > th dose independent rect. 3 23
109 85.37 precipitation 0.1 30 < th dose independent rect. 3 23
110 85.37 precipitation 0.1 30 < th dose dependent rect. 3 23
121 87.02 radiation 1.0 43200 < th dose dependent rect. 3 1
131 87.49 wind 9.0 1440 < th dose independent rect. 3 1
132 87.49 temperature 10.0 1440 > th dose independent rect. 3 1
135 87.49 temperature 30.0 1440 < th dose independent rect. 3 1
139 87.49 humidity 50.0 1440 > th dose independent rect. 3 1
148 87.49 atmosphere 995.0 1440 > th dose independent rect. 3 1
149 87.49 radiation 1.0 1440 < th dose independent rect. 3 1
169 87.49 temperature 10.0 1440 > th dose independent rect. 4 23
199 90.78 humidity 50.0 30 > th dose independent rect. 3 23
241 93.65 atmosphere 1015.0 30 < th dose independent rect. 3 23
264 94.94 humidity 90.0 90 < th dose independent rect. 2 1
288 96.90 wind 1.0 10 < th dose independent rect. 14 13
291 96.92 wind 1.0 10 < th dose independent rect. 17 10
303 97.09 wind 1.0 10 < th dose independent rect. 8 19
306 97.16 temperature 25.0 270 > th dose independent rect. 23 4
340 97.55 radiation 20.0 30 < th dose dependent rect. 3 23
342 97.65 temperature 30.0 30 < th dose independent rect. 3 23
344 97.75 wind 1.0 30 > th dose dependent rect. 2 1
388 98.64 temperature 25.0 270 > th dose dependent rect. 23 4
394 98.73 temperature 10.0 30 > th dose dependent rect. 3 23
395 98.74 atmosphere 1015.0 1440 < th dose independent rect. 3 1
400 98.83 temperature 20.0 270 < th dose independent rect. 9 1
403 98.85 radiation 10.0 30 < th dose independent rect. 3 23
419 99.21 temperature 10.0 720 > th dose independent rect. 15 8
420 99.21 temperature 10.0 720 > th dose independent rect. 23 16
422 99.22 wind 1.0 30 > th dose independent rect. 3 23
423 99.24 wind 1.0 10 > th dose independent sin 16 NA
439 99.41 temperature 10.0 720 > th dose independent rect. 3 8
440 99.41 atmosphere 995.0 720 > th dose independent rect. 3 8
441 99.41 temperature 10.0 720 > th dose independent rect. 11 16
445 99.44 temperature 10.0 720 > th dose dependent rect. 3 2
464 99.67 atmosphere 995.0 720 > th dose independent rect. 23 16
483 99.83 humidity 50.0 720 > th dose independent rect. 3 8
495 100.01 precipitation 0.1 720 < th dose independent rect. 15 8
497 100.01 precipitation 0.1 720 < th dose dependent rect. 15 8
519 100.23 humidity 50.0 30 > th dose dependent rect. 3 23
522 100.26 radiation 40.0 720 < th dose independent rect. 15 8
524 100.31 humidity 90.0 720 < th dose independent rect. 1 5
535 100.44 wind 9.0 720 < th dose independent rect. 3 8
541 100.50 wind 3.0 30 < th dose dependent rect. 22 5
543 100.52 wind 3.0 10 < th dose dependent rect. 11 16
545 100.54 humidity 90.0 720 > th dose independent rect. 3 2
550 100.58 precipitation 0.1 720 < th dose independent rect. 11 16
552 100.58 precipitation 0.1 720 < th dose dependent rect. 11 16
588 100.77 temperature 25.0 10 < th dose independent rect. 2 10
600 100.87 wind 3.0 30 < th dose dependent rect. 20 7
623 101.13 atmosphere 1015.0 720 < th dose independent rect. 3 8
630 101.19 radiation 40.0 30 < th dose independent rect. 3 23
634 101.21 wind 3.0 30 < th dose dependent rect. 13 14
642 101.24 wind 1.0 10 > th dose independent rect. 10 23
669 101.39 temperature 20.0 270 < th dose dependent rect. 9 1
674 101.39 atmosphere 995.0 30 > th dose dependent rect. 3 23
705 101.47 wind 1.0 10 > th dose independent rect. 21 23
738 101.51 precipitation 0.1 4320 > th dose independent rect. 14 3
742 101.52 precipitation 0.1 4320 < th dose independent rect. 15 2
745 101.52 precipitation 0.1 4320 < th dose dependent rect. 15 2
746 101.52 precipitation 0.1 4320 > th dose dependent rect. 14 3
747 101.52 wind 1.0 30 < th dose dependent rect. 9 18
755 101.56 wind 1.0 10 > th dose independent rect. 23 10
758 101.58 wind 1.0 720 > th dose independent rect. 15 8
765 101.62 atmosphere 995.0 720 > th dose independent rect. 3 12
784 101.69 wind 9.0 720 < th dose independent rect. 15 12
791 101.72 atmosphere 995.0 720 > th dose independent rect. 15 8
816 101.81 precipitation 0.1 720 < th dose independent rect. 15 12
818 101.81 precipitation 0.1 720 < th dose dependent rect. 15 12
838 101.88 atmosphere 995.0 720 > th dose independent rect. 11 16
844 101.89 humidity 90.0 720 < th dose independent rect. 24 12
852 101.93 humidity 90.0 720 < th dose independent rect. 24 10
854 101.94 wind 1.0 10 > th dose independent no NA NA
859 101.94 wind 9.0 30 < th dose dependent rect. 3 23
860 101.95 wind 1.0 10 > th dose independent rect. 21 12
861 101.95 temperature 10.0 720 > th dose independent rect. 3 12
862 101.95 temperature 10.0 720 > th dose independent rect. 15 12
866 101.97 wind 9.0 14400 > th dose independent rect. 23 2
883 102.04 wind 9.0 14400 > th dose dependent rect. 23 2
923 102.05 precipitation 0.1 4320 > th dose independent rect. 12 5
954 102.09 precipitation 0.1 4320 < th dose independent rect. 11 6
955 102.09 precipitation 0.1 4320 > th dose independent rect. 10 7
958 102.09 precipitation 0.1 4320 < th dose dependent rect. 11 6
978 102.13 wind 9.0 720 < th dose independent rect. 15 8
990 102.16 temperature 25.0 10 < th dose independent rect. 24 12
994 102.17 wind 1.0 10 > th dose independent rect. 14 17