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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0957800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.2 (0.0658) R2 : 0.682
β1 : -4.71 (0.428) R2dD : 0.615 R2D : -0.4
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.32 (0.223) R2dE : 0.41 R2E : -0.113
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -18.1 (1.68) R2dD*E : 0.626 R2D*E : -0.489
γ1 : 1.72 (0.121) R2dN8 : 0.305 R2N8 : 0.41
σ : 0.825
deviance : 313.95
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 26.25
memory length : 4952
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
305.16 0.821 4.22 -4.86 0.552 3.22 -0.291 -17.2 1.61 16.2 26.36 5416 -- --
354.08 0.876 3.89 -2.4 0.533 2.72 -0.267 -- 1.52 15.2 -2.643 23880 -- --
305.24 0.814 4.22 -4.9 0.533 3.26 -- -17.6 1.64 16.1 26.5 5390 -- --
351.77 0.874 3.9 -2.32 0.575 2.63 -- -- 1.55 16.6 6.145 24144 -- --
313.95 0.825 4.2 -4.71 -- 3.32 -- -18.1 1.72 -- 26.25 4952 -- --
460.38 1.01 3.68 0.0163 0.517 -- -0.273 -- 2.54 17.1 -- -- -- --
460.57 1 3.68 0.016 0.516 -- -- -- 2.54 17.2 -- -- -- --
350.28 0.872 3.86 -1.51 -- 2.79 -- -- 1.69 -- 7.414 9049 -- --
365.21 0.89 3.78 -- 0.483 1.57 -- -- 2.15 16.7 20.9 6370 -- --
474.5 1.02 3.67 -0.0022 -- -- -- -- 2.53 -- -- -- -- --
460.58 1 3.68 -- 0.516 -- -- -- 2.54 17.2 -- -- -- --
379.38 0.907 3.75 -- -- 1.57 -- -- 2.17 -- 20.95 6310 -- --
474.5 1.02 3.67 -- -- -- -- -- 2.53 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 289.22 wind 1 43200 < th dose dependent rect. 24 2
2 289.82 radiation 20 43200 < th dose independent rect. 8 1
4 290.83 radiation 1 14400 < th dose dependent rect. 3 2
9 292.28 radiation 20 43200 < th dose independent rect. 4 5
15 292.30 radiation 20 43200 < th dose independent rect. 22 11
17 292.31 radiation 20 43200 < th dose independent rect. 19 14
22 292.50 radiation 40 43200 < th dose independent rect. 10 1
45 298.04 radiation 20 43200 < th dose independent sin 11 NA
47 298.64 radiation 40 43200 < th dose independent rect. 16 19
48 298.72 radiation 40 43200 < th dose independent rect. 4 7
55 298.74 radiation 40 43200 < th dose independent rect. 7 4
66 299.07 radiation 1 43200 > th dose independent rect. 18 1
82 299.71 humidity 60 43200 > th dose independent rect. 20 16
85 299.97 humidity 80 43200 < th dose independent rect. 21 1
86 299.97 wind 5 43200 < th dose dependent rect. 20 2
125 300.74 radiation 40 43200 > th dose dependent rect. 10 1
171 301.22 radiation 40 43200 > th dose independent rect. 10 1
239 303.03 humidity 70 43200 < th dose dependent rect. 20 15
244 303.24 wind 5 43200 > th dose dependent rect. 10 7
246 303.29 wind 5 43200 > th dose dependent rect. 12 4
247 303.33 humidity 60 43200 < th dose independent rect. 11 1
284 303.62 wind 3 43200 < th dose independent rect. 9 1
286 303.67 wind 3 43200 > th dose independent rect. 9 1
289 303.82 wind 5 43200 > th dose dependent rect. 14 2
297 304.03 radiation 1 43200 < th dose dependent rect. 21 8
304 304.24 radiation 40 43200 < th dose independent rect. 9 23
312 304.42 temperature 25 4320 > th dose independent rect. 5 4
336 304.60 radiation 40 43200 < th dose independent rect. 9 11
337 304.61 radiation 40 43200 < th dose independent rect. 9 9
343 304.61 radiation 40 43200 < th dose independent rect. 9 21
374 304.78 radiation 30 43200 > th dose dependent rect. 16 19
376 304.81 radiation 30 43200 > th dose dependent rect. 7 4
420 305.15 wind 3 43200 > th dose independent rect. 20 2
427 305.41 temperature 25 4320 > th dose independent rect. 4 8
428 305.41 radiation 40 43200 < th dose independent rect. 4 16
434 305.42 radiation 40 43200 < th dose independent rect. 5 13
435 305.42 radiation 40 43200 < th dose independent rect. 7 13
473 305.43 radiation 40 43200 < th dose independent no NA NA
474 305.43 radiation 40 43200 < th dose independent rect. 7 11
508 305.43 radiation 40 43200 < th dose independent rect. 7 22
517 305.43 radiation 40 43200 < th dose independent rect. 19 23
560 305.57 temperature 25 4320 < th dose independent rect. 7 1
564 305.61 humidity 60 43200 < th dose independent rect. 19 18
565 305.62 radiation 20 43200 > th dose independent rect. 17 16
566 305.64 radiation 20 43200 > th dose independent rect. 6 3
627 305.75 wind 3 43200 < th dose independent rect. 21 1
680 305.91 radiation 10 43200 > th dose dependent rect. 8 1
732 306.07 temperature 25 4320 < th dose independent rect. 5 4
739 306.10 temperature 25 4320 < th dose independent rect. 4 8
751 306.21 radiation 1 43200 > th dose dependent rect. 5 2
814 306.61 humidity 80 43200 > th dose independent rect. 21 1
834 306.98 radiation 30 43200 > th dose dependent sin 10 NA