Os01g0957100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0957100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 388.82 | 0.926 | 3.23 | 1.26 | 0.579 | -1.01 | 0.883 | 4.7 | 0.165 | 9.24 | 26.5 | 4441 | -- | -- |
| 396.93 | 0.928 | 3.31 | 0.745 | 0.683 | -1.08 | 0.83 | -- | 0.274 | 8.79 | 22 | 6452 | -- | -- |
| 391.43 | 0.921 | 3.23 | 1.31 | 0.579 | -1 | -- | 4.84 | 0.148 | 9.23 | 26.66 | 4425 | -- | -- |
| 396.51 | 0.927 | 3.3 | 0.6 | 0.559 | -1.01 | -- | -- | 0.21 | 9.2 | 21.6 | 6540 | -- | -- |
| 410.69 | 0.944 | 3.24 | 1.37 | -- | -1.04 | -- | 4.96 | 0.178 | -- | 26.59 | 4382 | -- | -- |
| 413.91 | 0.954 | 3.42 | -0.217 | 0.602 | -- | 0.898 | -- | -0.251 | 9.36 | -- | -- | -- | -- |
| 416.83 | 0.956 | 3.42 | -0.184 | 0.598 | -- | -- | -- | -0.25 | 9.38 | -- | -- | -- | -- |
| 414.69 | 0.948 | 3.33 | 0.518 | -- | -0.98 | -- | -- | 0.158 | -- | 21.8 | 6540 | -- | -- |
| 397.39 | 0.928 | 3.36 | -- | 0.564 | -0.73 | -- | -- | 0.0104 | 9.31 | 22.1 | 3787 | -- | -- |
| 437.77 | 0.978 | 3.43 | -0.188 | -- | -- | -- | -- | -0.247 | -- | -- | -- | -- | -- |
| 417.73 | 0.956 | 3.41 | -- | 0.598 | -- | -- | -- | -0.229 | 9.4 | -- | -- | -- | -- |
| 415.76 | 0.95 | 3.37 | -- | -- | -0.767 | -- | -- | 0.02 | -- | 22.16 | 3737 | -- | -- |
| 438.7 | 0.978 | 3.43 | -- | -- | -- | -- | -- | -0.227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 378.76 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 2 | 380.23 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 3 | 380.65 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 4 | 380.66 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 12 | 380.71 | humidity | 50 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 15 | 380.87 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 17 |
| 18 | 380.93 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 28 | 381.13 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 31 | 381.24 | humidity | 50 | 43200 | > th | dose independent | sin | 14 | NA |
| 35 | 381.53 | radiation | 30 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 39 | 382.08 | humidity | 50 | 43200 | < th | dose independent | sin | 13 | NA |
| 43 | 382.22 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 4 |
| 44 | 382.25 | radiation | 30 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 46 | 382.34 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 12 |
| 52 | 382.35 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 10 |
| 67 | 382.45 | radiation | 30 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 68 | 382.46 | radiation | 30 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 101 | 382.64 | humidity | 60 | 43200 | < th | dose dependent | sin | 20 | NA |
| 108 | 382.65 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 214 | 382.96 | radiation | 30 | 43200 | < th | dose independent | rect. | 14 | 6 |
| 219 | 382.96 | radiation | 30 | 43200 | < th | dose independent | rect. | 14 | 15 |
| 226 | 382.97 | radiation | 30 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 235 | 382.98 | radiation | 10 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 242 | 382.99 | radiation | 30 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 245 | 382.99 | radiation | 10 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 253 | 383.00 | radiation | 30 | 43200 | > th | dose dependent | sin | 14 | NA |
| 286 | 383.05 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 15 |
| 331 | 383.10 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 344 | 383.10 | humidity | 60 | 43200 | < th | dose dependent | rect. | 23 | 23 |
| 356 | 383.11 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 23 |
| 414 | 383.22 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 23 |
| 466 | 383.37 | humidity | 60 | 43200 | < th | dose dependent | rect. | 15 | 23 |
| 469 | 383.39 | radiation | 10 | 43200 | < th | dose dependent | sin | 10 | NA |
| 479 | 383.43 | radiation | 40 | 43200 | < th | dose dependent | rect. | 14 | 18 |
| 528 | 383.53 | radiation | 30 | 43200 | < th | dose independent | sin | 15 | NA |
| 711 | 383.86 | radiation | 40 | 43200 | < th | dose dependent | sin | 13 | NA |
| 817 | 384.11 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 5 |
| 860 | 384.19 | radiation | 30 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 875 | 384.22 | radiation | 40 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 917 | 384.26 | radiation | 40 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 991 | 384.36 | radiation | 20 | 43200 | > th | dose independent | rect. | 15 | 17 |