Os01g0956800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0956800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.2	(0.0147)	R²	:	0.456
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	5.42	(0.279)	R²_dE	:	0.451	R²_E	:	0.452
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.0521	(0.031)	R²_dN8	:	0.00435	R²_N8	:	0.00533
σ	:	0.278
deviance	:	35.33
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	0.9941
memory length	:	5
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	7.05
open length of G	:	0.966

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
34.4	0.273	3.13	0.568	0.0977	-9.76	0.0308	92.4	-0.0426	8.34	1	10	7	1
34.55	0.276	3.19	0.0997	0.0957	5.35	0.0277	--	-0.0421	8.35	1	10	7	1
34.41	0.273	3.13	0.569	0.0977	-9.76	--	92.4	-0.0426	8.28	1	10	7	1
34.55	0.276	3.19	0.1	0.0958	5.36	--	--	-0.0421	8.29	1	10	7	1
34.93	0.275	3.13	0.568	--	-9.69	--	92.3	-0.0414	--	0.9922	10	6.99	1
62.95	0.372	3.19	0.123	0.142	--	0.159	--	-0.0545	8.19	--	--	--	--
63.02	0.372	3.19	0.128	0.142	--	--	--	-0.0547	8.09	--	--	--	--
35.06	0.277	3.19	0.101	--	5.4	--	--	-0.0409	--	0.9941	5	7.05	0.966
34.82	0.276	3.19	--	0.0962	5.37	--	--	-0.0532	8.21	1	10	7	1
64.13	0.374	3.2	0.129	--	--	--	--	-0.0529	--	--	--	--	--
63.45	0.373	3.2	--	0.143	--	--	--	-0.0689	8.02	--	--	--	--
35.33	0.278	3.2	--	--	5.42	--	--	-0.0521	--	0.9941	5	7.05	0.966
64.57	0.375	3.2	--	--	--	--	--	-0.0673	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	34.40	wind	1	10	< th	dose independent	rect.	7	1
2	34.41	wind	1	10	< th	dose dependent	rect.	7	1
3	34.44	humidity	70	10	< th	dose independent	rect.	7	1
63	34.44	humidity	70	10	< th	dose dependent	rect.	7	1
123	34.50	atmosphere	1000	10	< th	dose independent	rect.	7	1
131	34.50	atmosphere	1000	10	< th	dose dependent	rect.	7	1
160	45.49	radiation	30	30	> th	dose independent	rect.	7	1
231	47.20	radiation	20	30	> th	dose dependent	rect.	7	1
284	48.76	atmosphere	1000	270	< th	dose independent	rect.	4	1
285	48.76	atmosphere	1000	270	< th	dose dependent	rect.	4	1
515	53.23	temperature	25	30	> th	dose dependent	rect.	7	1
527	53.44	atmosphere	1000	90	< th	dose independent	rect.	1	7
568	53.70	temperature	25	30	> th	dose dependent	rect.	24	8
570	53.76	atmosphere	1000	10	< th	dose independent	rect.	1	8
686	54.35	atmosphere	1000	10	< th	dose dependent	rect.	1	8
704	54.63	atmosphere	1000	90	< th	dose dependent	rect.	1	7
776	55.06	atmosphere	1000	720	< th	dose independent	rect.	21	11
799	55.24	radiation	20	30	< th	dose independent	sin	11	NA
825	55.33	radiation	20	30	> th	dose independent	sin	11	NA
850	55.43	temperature	25	30	> th	dose independent	rect.	7	1
975	55.89	radiation	10	10	> th	dose dependent	sin	11	NA
979	55.92	atmosphere	1000	270	< th	dose independent	sin	6	NA
980	55.93	atmosphere	1000	270	> th	dose independent	sin	6	NA
992	55.99	wind	1	270	< th	dose dependent	rect.	5	2