Os01g0956200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF563 family protein.
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Os01g0956200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF563 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 234.25 | 0.719 | 9.38 | -0.748 | 0.447 | 3.05 | -2.53 | -5.05 | -0.26 | 8.18 | 15.61 | 429 | 0.603 | 19.2 |
| 250.51 | 0.737 | 9.28 | -0.0438 | 0.394 | 2.95 | -2.19 | -- | -0.0634 | 9.88 | 13.97 | 420 | 0.0167 | 20.5 |
| 246.55 | 0.731 | 9.37 | -0.699 | 0.542 | 3.51 | -- | -4.81 | -0.232 | 3.49 | 9.304 | 452 | 0.0333 | 19.3 |
| 264.93 | 0.758 | 9.29 | -0.0897 | 0.646 | 3.32 | -- | -- | -0.0604 | 4.27 | 9.493 | 471 | 0.402 | 18.8 |
| 252.32 | 0.74 | 9.35 | -0.542 | -- | 2.97 | -- | -4.17 | -0.159 | -- | 10.52 | 425 | 0.0167 | 19.6 |
| 367.92 | 0.899 | 9.21 | 0.479 | 1.22 | -- | -1.47 | -- | 0.315 | 14.5 | -- | -- | -- | -- |
| 374.78 | 0.907 | 9.22 | 0.441 | 1.24 | -- | -- | -- | 0.308 | 14.9 | -- | -- | -- | -- |
| 272.05 | 0.768 | 9.3 | -0.0956 | -- | 2.89 | -- | -- | -0.0714 | -- | 11.17 | 420 | 0.0166 | 19.7 |
| 264.99 | 0.758 | 9.3 | -- | 0.749 | 3.43 | -- | -- | -0.0677 | 4.22 | 8.886 | 478 | 0.4 | 18.7 |
| 462.93 | 1.01 | 9.23 | 0.389 | -- | -- | -- | -- | 0.276 | -- | -- | -- | -- | -- |
| 379.92 | 0.912 | 9.23 | -- | 1.23 | -- | -- | -- | 0.259 | 14.9 | -- | -- | -- | -- |
| 271.71 | 0.768 | 9.3 | -- | -- | 2.79 | -- | -- | -0.0355 | -- | 10.75 | 428 | 0.0167 | 19.7 |
| 466.92 | 1.01 | 9.24 | -- | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 246.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 19 |
| 71 | 258.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 72 | 259.00 | temperature | 15 | 720 | > th | dose dependent | sin | 2 | NA |
| 170 | 263.29 | temperature | 15 | 270 | > th | dose dependent | sin | 20 | NA |
| 232 | 265.55 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 246 | 266.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 271 | 266.71 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 19 |
| 292 | 267.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 298 | 267.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 321 | 268.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 7 |
| 333 | 268.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 6 |
| 335 | 268.28 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 7 |
| 356 | 268.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 415 | 269.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 438 | 269.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 493 | 270.07 | temperature | 10 | 4320 | > th | dose dependent | sin | 6 | NA |
| 599 | 270.47 | temperature | 30 | 4320 | < th | dose dependent | sin | 7 | NA |
| 1000 | 271.55 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |