Os01g0955700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0955700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.63 | 0.43 | 10 | -1.28 | 2.47 | -2.07 | 0.212 | 3.04 | -0.496 | 7.38 | 21.16 | 36 | 0.0806 | -- |
| 89.34 | 0.44 | 10.1 | -1.63 | 2.44 | -1.95 | 0.829 | -- | -0.578 | 7.35 | 20.93 | 47 | 0.201 | -- |
| 83.54 | 0.426 | 10 | -1.23 | 2.48 | -2.07 | -- | 3.32 | -0.491 | 7.35 | 21.12 | 44 | 0.157 | -- |
| 91.52 | 0.446 | 10.1 | -1.65 | 2.38 | -1.82 | -- | -- | -0.602 | 7.18 | 21.25 | 47 | 0.64 | -- |
| 186.71 | 0.636 | 10.2 | -1.1 | -- | -1.36 | -- | 2.55 | -0.579 | -- | 24.07 | 833 | 4.22e-07 | -- |
| 135.63 | 0.546 | 10.2 | -1.95 | 1.61 | -- | 0.536 | -- | -0.93 | 6.81 | -- | -- | -- | -- |
| 136.33 | 0.547 | 10.2 | -1.94 | 1.61 | -- | -- | -- | -0.931 | 6.76 | -- | -- | -- | -- |
| 176.3 | 0.618 | 10.1 | -1.48 | -- | -1.69 | -- | -- | -0.625 | -- | 24.04 | 842 | 0.00412 | -- |
| 160.69 | 0.59 | 10 | -- | 2.61 | -2.33 | -- | -- | -0.347 | 7.26 | 20.98 | 82 | 0.834 | -- |
| 271.7 | 0.77 | 10.2 | -1.91 | -- | -- | -- | -- | -0.9 | -- | -- | -- | -- | -- |
| 235.82 | 0.718 | 10.1 | -- | 1.59 | -- | -- | -- | -0.715 | 6.83 | -- | -- | -- | -- |
| 221.65 | 0.693 | 10.1 | -- | -- | -2.39 | -- | -- | -0.258 | -- | 18.82 | 1018 | 1.22e-07 | -- |
| 367.59 | 0.895 | 10.2 | -- | -- | -- | -- | -- | -0.688 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 5 | 85.07 | temperature | 20 | 30 | > th | dose dependent | sin | 6 | NA |
| 11 | 85.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 20 |
| 14 | 86.04 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 17 | 86.62 | temperature | 30 | 30 | < th | dose dependent | sin | 5 | NA |
| 27 | 88.16 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 55 | 90.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 70 | 90.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 81 | 91.40 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 7 |
| 92 | 91.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 97 | 91.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 18 |
| 129 | 92.49 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 131 | 92.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 181 | 93.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 17 |
| 186 | 93.86 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 187 | 93.88 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 17 |
| 189 | 93.89 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 18 |
| 200 | 94.01 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 16 |
| 334 | 95.92 | temperature | 25 | 90 | > th | dose independent | sin | 4 | NA |
| 344 | 96.09 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 17 |
| 391 | 96.55 | temperature | 25 | 90 | > th | dose independent | rect. | 2 | 11 |
| 396 | 96.60 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 21 |
| 412 | 96.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 449 | 97.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 453 | 97.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 22 |
| 499 | 97.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 503 | 97.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 20 |
| 512 | 97.77 | temperature | 25 | 90 | < th | dose independent | sin | 6 | NA |
| 559 | 98.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 569 | 98.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 5 |
| 593 | 98.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 608 | 98.42 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 616 | 98.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 647 | 98.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 669 | 98.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 764 | 99.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 894 | 99.68 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 5 |
| 903 | 99.71 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |