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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0954900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nucleoid DNA-binding-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0467) R2 : 0.00761
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.184 (0.0983) R2dN8 : 0.00983 R2N8 : 0.00761
σ : 0.88
deviance : 355.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
341.21 0.868 3.01 -0.167 0.00152 -0.699 0.344 0.695 0.179 4.25 1.1 16 -- --
341.66 0.861 3.01 -0.135 0.0101 -0.649 0.256 -- 0.187 4.2 1.103 16 -- --
341.52 0.861 3.01 -0.166 0.00281 -0.698 -- 0.573 0.178 4.16 1.108 16 -- --
341.84 0.861 3.01 -0.138 0.0107 -0.653 -- -- 0.186 5.63 1.104 16 -- --
341.52 0.861 3.01 -0.165 -- -0.699 -- 0.573 0.178 -- 1.109 16 -- --
352.21 0.88 3 -0.0477 0.212 -- 0.381 -- 0.176 4.37 -- -- -- --
352.6 0.879 3.01 -0.0509 0.215 -- -- -- 0.174 4.42 -- -- -- --
341.85 0.861 3.01 -0.139 -- -0.66 -- -- 0.185 -- 1.104 16 -- --
342.34 0.862 3 -- 0.0141 -0.635 -- -- 0.2 5.5 1.143 16 -- --
355.08 0.881 3.01 -0.0425 -- -- -- -- 0.179 -- -- -- -- --
352.67 0.878 3 -- 0.214 -- -- -- 0.179 4.43 -- -- -- --
342.35 0.862 3 -- -- -0.643 -- -- 0.2 -- 1.149 16 -- --
355.13 0.88 3.01 -- -- -- -- -- 0.184 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 327.66 radiation 40.0 43200 < th dose dependent rect. 23 1
2 327.71 temperature 30.0 30 < th dose dependent rect. 22 1
3 327.96 wind 1.0 30 > th dose dependent rect. 22 1
5 328.54 atmosphere 1000.0 30 > th dose independent rect. 22 1
6 328.59 wind 1.0 30 > th dose independent rect. 22 1
7 328.69 humidity 60.0 30 > th dose dependent rect. 22 1
10 328.75 wind 7.0 30 < th dose independent rect. 22 1
12 328.75 temperature 10.0 30 > th dose independent rect. 22 1
14 328.75 temperature 30.0 30 < th dose independent rect. 22 1
15 328.75 humidity 50.0 30 > th dose independent rect. 22 1
19 328.75 atmosphere 1010.0 30 < th dose independent rect. 22 1
21 328.75 radiation 1.0 30 < th dose independent rect. 22 1
26 328.75 temperature 10.0 30 > th dose independent rect. 23 23
27 328.75 radiation 1.0 30 < th dose dependent rect. 22 1
34 328.80 atmosphere 995.0 30 > th dose dependent rect. 22 1
43 329.08 wind 9.0 30 < th dose dependent rect. 22 1
44 329.12 atmosphere 1015.0 30 < th dose dependent rect. 22 1
48 329.26 wind 7.0 1440 < th dose independent rect. 23 1
49 329.28 temperature 10.0 30 > th dose dependent rect. 22 1
79 329.76 precipitation 0.1 30 < th dose independent rect. 22 1
81 329.76 precipitation 0.1 30 < th dose dependent rect. 22 1
85 329.91 humidity 90.0 30 < th dose dependent rect. 22 1
88 329.94 temperature 10.0 1440 > th dose independent rect. 23 1
91 329.94 temperature 30.0 1440 < th dose independent rect. 23 1
95 329.94 humidity 50.0 1440 > th dose independent rect. 23 1
105 329.94 atmosphere 995.0 1440 > th dose independent rect. 23 1
106 329.94 radiation 1.0 1440 < th dose independent rect. 23 1
126 329.94 temperature 10.0 1440 > th dose independent rect. 24 23
129 329.94 radiation 1.0 1440 < th dose dependent rect. 23 1
134 329.99 humidity 90.0 30 < th dose independent rect. 22 1
153 331.93 wind 9.0 30 < th dose independent rect. 23 23
161 333.51 radiation 1.0 43200 < th dose dependent rect. 3 1
177 334.77 wind 9.0 1440 < th dose independent rect. 3 1
178 334.77 temperature 10.0 1440 > th dose independent rect. 3 1
181 334.77 temperature 30.0 1440 < th dose independent rect. 3 1
185 334.77 humidity 50.0 1440 > th dose independent rect. 3 1
194 334.77 atmosphere 995.0 1440 > th dose independent rect. 3 1
195 334.77 radiation 1.0 1440 < th dose independent rect. 3 1
215 334.77 temperature 10.0 1440 > th dose independent rect. 4 23
227 334.98 wind 7.0 720 < th dose independent rect. 3 8
230 335.10 wind 9.0 30 < th dose independent rect. 3 23
231 335.27 wind 9.0 720 < th dose independent rect. 23 16
235 335.88 wind 1.0 10 > th dose independent rect. 23 23
236 335.88 atmosphere 1000.0 30 > th dose independent rect. 3 23
240 336.43 humidity 90.0 10 > th dose independent rect. 2 1
242 336.60 humidity 50.0 720 > th dose independent rect. 3 8
243 336.63 humidity 80.0 30 > th dose dependent rect. 2 1
245 336.67 temperature 10.0 720 > th dose independent rect. 3 8
246 336.67 atmosphere 995.0 720 > th dose independent rect. 3 8
247 336.67 temperature 10.0 720 > th dose independent rect. 11 16
248 336.71 temperature 20.0 10 > th dose independent rect. 2 1
251 336.75 atmosphere 1015.0 30 < th dose dependent rect. 2 1
252 336.77 temperature 15.0 10 > th dose dependent rect. 2 1
258 336.80 wind 5.0 30 < th dose dependent rect. 2 1
262 336.82 wind 5.0 30 < th dose independent rect. 2 1
272 336.88 temperature 10.0 30 > th dose independent rect. 2 1
274 336.88 temperature 30.0 30 < th dose independent rect. 2 1
275 336.88 humidity 50.0 30 > th dose independent rect. 2 1
278 336.88 atmosphere 995.0 30 > th dose independent rect. 2 1
279 336.88 atmosphere 1010.0 30 < th dose independent rect. 2 1
281 336.88 radiation 1.0 30 < th dose independent rect. 2 1
286 336.88 precipitation 0.1 30 < th dose independent rect. 2 1
287 336.88 temperature 10.0 30 > th dose independent rect. 3 23
288 336.88 radiation 1.0 30 < th dose dependent rect. 2 1
293 336.88 precipitation 0.1 30 < th dose dependent rect. 2 1
300 336.98 atmosphere 995.0 30 > th dose dependent rect. 2 1
302 336.99 atmosphere 1005.0 30 > th dose dependent rect. 2 1
311 337.15 wind 1.0 30 > th dose independent rect. 2 1
312 337.15 temperature 30.0 30 < th dose dependent rect. 2 1
317 337.23 temperature 10.0 720 > th dose independent rect. 15 8
318 337.23 temperature 10.0 720 > th dose independent rect. 23 16
325 337.37 atmosphere 1015.0 720 < th dose independent rect. 3 8
352 337.47 radiation 40.0 720 < th dose independent rect. 15 8
365 338.32 wind 1.0 720 > th dose independent rect. 15 8
367 338.40 precipitation 0.1 720 < th dose independent rect. 11 16
368 338.40 wind 1.0 10 > th dose independent rect. 13 22
370 338.40 precipitation 0.1 720 < th dose dependent rect. 11 16
371 338.48 precipitation 0.1 30 < th dose independent rect. 3 23
372 338.48 precipitation 0.1 30 < th dose dependent rect. 3 23
374 338.81 precipitation 0.1 720 < th dose independent rect. 15 8
375 338.81 precipitation 0.1 720 < th dose dependent rect. 15 8
380 339.19 wind 1.0 10 > th dose independent rect. 23 12
381 339.28 wind 1.0 10 > th dose independent rect. 14 18
389 339.86 temperature 25.0 270 > th dose independent rect. 22 2
390 339.95 temperature 25.0 270 > th dose dependent rect. 22 2
391 339.98 temperature 30.0 30 < th dose independent rect. 3 23
392 340.04 atmosphere 1015.0 1440 < th dose independent rect. 3 1
399 340.29 temperature 25.0 270 > th dose dependent rect. 22 5
405 340.41 temperature 25.0 270 > th dose independent rect. 22 4
409 340.61 humidity 90.0 14400 < th dose independent rect. 1 5
412 340.69 temperature 25.0 270 > th dose independent rect. 19 8
414 340.71 wind 1.0 10 > th dose independent rect. 23 9
417 340.72 wind 1.0 90 < th dose dependent rect. 8 1
418 340.74 temperature 25.0 270 < th dose independent rect. 18 13
425 340.80 radiation 1.0 720 < th dose dependent rect. 18 7
426 340.80 temperature 20.0 270 > th dose dependent rect. 19 8
427 340.81 wind 7.0 270 < th dose independent rect. 3 14
443 341.14 humidity 90.0 14400 < th dose independent rect. 1 3
449 341.20 radiation 10.0 43200 < th dose dependent rect. 20 8
451 341.23 temperature 10.0 270 > th dose dependent rect. 18 9
452 341.25 atmosphere 995.0 720 > th dose independent rect. 11 16
456 341.34 wind 1.0 270 > th dose independent rect. 3 14
457 341.40 wind 3.0 43200 > th dose dependent rect. 15 2
459 341.43 wind 1.0 43200 > th dose independent rect. 2 1
471 341.53 wind 5.0 43200 < th dose independent rect. 16 1
475 341.58 atmosphere 995.0 720 > th dose independent rect. 15 8
477 341.60 wind 1.0 43200 < th dose independent rect. 2 1
481 341.62 wind 5.0 43200 < th dose independent rect. 15 4
491 341.70 wind 9.0 43200 < th dose dependent rect. 15 2
497 341.73 wind 5.0 43200 > th dose independent rect. 15 4
513 341.84 wind 5.0 43200 > th dose independent rect. 16 1
523 341.88 wind 9.0 720 < th dose independent rect. 15 8
526 341.89 humidity 50.0 720 > th dose independent rect. 23 16
528 341.90 temperature 25.0 270 > th dose independent sin 11 NA
530 341.90 wind 1.0 90 > th dose independent rect. 3 8
576 342.09 wind 9.0 43200 < th dose dependent rect. 12 7
592 342.14 radiation 20.0 14400 < th dose independent rect. 20 10
595 342.15 temperature 30.0 43200 > th dose dependent rect. 12 1
611 342.18 temperature 25.0 270 < th dose independent sin 11 NA
623 342.24 radiation 20.0 43200 > th dose independent rect. 9 1
657 342.34 wind 3.0 43200 > th dose independent rect. 9 8
726 342.45 precipitation 0.1 720 < th dose independent rect. 3 8
727 342.45 wind 1.0 43200 < th dose dependent rect. 2 1
730 342.45 precipitation 0.1 720 < th dose dependent rect. 3 8
734 342.46 temperature 30.0 43200 > th dose independent rect. 10 1
770 342.49 temperature 30.0 43200 > th dose dependent sin 7 NA
779 342.51 wind 1.0 90 < th dose independent rect. 8 1
786 342.52 temperature 30.0 43200 < th dose independent rect. 10 1
837 342.60 wind 3.0 43200 < th dose independent rect. 9 8
843 342.61 wind 1.0 43200 < th dose dependent rect. 11 1
868 342.63 wind 1.0 30 < th dose independent rect. 2 3
873 342.63 radiation 10.0 720 < th dose dependent rect. 8 2
907 342.64 humidity 50.0 10 > th dose independent rect. 3 23
934 342.66 temperature 30.0 43200 < th dose independent rect. 22 13
938 342.66 atmosphere 995.0 720 > th dose independent rect. 23 16
943 342.66 radiation 1.0 4320 < th dose dependent rect. 19 11
944 342.67 radiation 10.0 43200 > th dose independent rect. 7 1
960 342.67 precipitation 0.1 30 < th dose independent rect. 23 23
966 342.67 precipitation 0.1 30 < th dose dependent rect. 23 23
970 342.68 radiation 1.0 4320 < th dose independent rect. 18 12
973 342.68 radiation 1.0 4320 < th dose dependent rect. 21 9