Os01g0953400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
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Os01g0953400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NB-ARC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.72 | 0.314 | 5.89 | 0.528 | 0.72 | -1.08 | -0.361 | -1.26 | 0.262 | 2.46 | 18.5 | 3799 | -- | -- |
| 45.92 | 0.316 | 5.92 | 0.459 | 0.736 | -0.729 | -0.283 | -- | 0.251 | 2.43 | 18.6 | 3587 | -- | -- |
| 45.12 | 0.313 | 5.89 | 0.53 | 0.725 | -1.1 | -- | -1.21 | 0.262 | 2.49 | 18.49 | 3660 | -- | -- |
| 46.28 | 0.317 | 5.92 | 0.452 | 0.728 | -0.743 | -- | -- | 0.246 | 2.49 | 18.6 | 3642 | -- | -- |
| 74.04 | 0.401 | 5.9 | 0.536 | -- | -1.11 | -- | -0.91 | 0.264 | -- | 18.3 | 2408 | -- | -- |
| 52.78 | 0.341 | 5.89 | 0.806 | 0.755 | -- | -0.357 | -- | 0.382 | 2.44 | -- | -- | -- | -- |
| 53.24 | 0.342 | 5.89 | 0.816 | 0.754 | -- | -- | -- | 0.384 | 2.44 | -- | -- | -- | -- |
| 75.46 | 0.405 | 5.92 | 0.474 | -- | -0.848 | -- | -- | 0.256 | -- | 18.31 | 2404 | -- | -- |
| 48.07 | 0.323 | 5.93 | -- | 0.738 | -0.75 | -- | -- | 0.178 | 2.39 | 18.4 | 21081 | -- | -- |
| 86.8 | 0.435 | 5.89 | 0.848 | -- | -- | -- | -- | 0.403 | -- | -- | -- | -- | -- |
| 70.79 | 0.394 | 5.91 | -- | 0.77 | -- | -- | -- | 0.293 | 2.46 | -- | -- | -- | -- |
| 79.42 | 0.415 | 5.94 | -- | -- | -1.16 | -- | -- | 0.163 | -- | 18.31 | 2446 | -- | -- |
| 105.77 | 0.48 | 5.91 | -- | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.91 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 3 | 42.07 | radiation | 30 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 5 | 42.12 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 6 | 42.12 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 7 | 42.13 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 45 | 42.18 | radiation | 30 | 43200 | < th | dose independent | sin | 14 | NA |
| 64 | 42.21 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 66 | 42.21 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 16 |
| 142 | 42.24 | radiation | 40 | 43200 | > th | dose dependent | sin | 14 | NA |
| 241 | 42.29 | radiation | 10 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 327 | 42.34 | radiation | 30 | 43200 | > th | dose dependent | rect. | 15 | 17 |
| 340 | 42.36 | radiation | 10 | 43200 | > th | dose dependent | sin | 13 | NA |
| 394 | 42.38 | radiation | 40 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 401 | 42.38 | radiation | 40 | 43200 | < th | dose dependent | rect. | 16 | 16 |
| 415 | 42.39 | radiation | 10 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 422 | 42.39 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 20 |
| 433 | 42.40 | radiation | 40 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 460 | 42.41 | radiation | 40 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 492 | 42.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 519 | 42.43 | radiation | 30 | 43200 | < th | dose dependent | sin | 12 | NA |
| 520 | 42.43 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 547 | 42.44 | radiation | 10 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 556 | 42.44 | radiation | 10 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 598 | 42.45 | radiation | 10 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 665 | 42.47 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 802 | 42.50 | radiation | 30 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 855 | 42.52 | radiation | 10 | 43200 | < th | dose independent | no | NA | NA |