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Os01g0952200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0169) R2 : 0.00907
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0727 (0.0356) R2dN8 : 0.0117 R2N8 : 0.00907
σ : 0.318
deviance : 46.56
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.15 0.2 10.2 0.748 0.512 -0.292 -0.0127 1.63 0.132 15.1 18.9 2250 -- --
21.52 0.216 10.2 0.755 0.456 -0.721 -0.448 -- 0.0945 14.7 16.6 9788 -- --
18.15 0.198 10.2 0.748 0.512 -0.291 -- 1.63 0.132 15.1 18.91 2250 -- --
18.79 0.202 10.2 0.845 0.521 -0.993 -- -- 0.133 15 13.8 28698 -- --
32.07 0.264 10.2 0.753 -- -0.431 -- 1.53 0.154 -- 18.3 2415 -- --
28.87 0.252 10.2 0.265 0.53 -- -0.176 -- -0.0315 15 -- -- -- --
28.97 0.252 10.2 0.261 0.53 -- -- -- -0.0326 15 -- -- -- --
33.63 0.27 10.2 0.885 -- -1.1 -- -- 0.143 -- 13.3 28425 -- --
27.59 0.245 10.2 -- 0.511 -0.642 -- -- 0.00445 14.9 14.78 8088 -- --
45.06 0.314 10.2 0.238 -- -- -- -- -0.0463 -- -- -- -- --
30.77 0.259 10.2 -- 0.524 -- -- -- -0.0616 15 -- -- -- --
42.09 0.302 10.2 -- -- -0.882 -- -- -0.033 -- 14.7 6798 -- --
46.56 0.318 10.2 -- -- -- -- -- -0.0727 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.47 humidity 90 14400 > th dose dependent rect. 24 14
14 16.57 humidity 90 14400 > th dose dependent rect. 3 7
15 16.58 humidity 90 14400 > th dose dependent sin 5 NA
43 16.75 humidity 90 14400 > th dose independent rect. 23 11
71 16.88 humidity 90 14400 > th dose dependent rect. 4 4
80 16.91 humidity 90 14400 > th dose dependent rect. 5 2
94 16.95 humidity 90 14400 > th dose independent sin 8 NA
134 17.07 humidity 90 14400 > th dose dependent rect. 12 19
252 17.33 humidity 90 14400 > th dose dependent no NA NA
262 17.37 humidity 90 14400 > th dose dependent rect. 17 11
275 17.41 humidity 90 14400 > th dose dependent rect. 19 8
283 17.44 humidity 90 14400 > th dose independent rect. 3 5
292 17.48 humidity 90 14400 > th dose independent rect. 18 10
303 17.52 humidity 90 14400 > th dose dependent rect. 21 5
318 17.57 humidity 90 14400 < th dose independent rect. 23 11
379 17.78 humidity 90 14400 > th dose independent rect. 23 1
389 17.81 humidity 90 14400 < th dose independent sin 8 NA
415 17.89 radiation 1 14400 > th dose independent rect. 18 11
429 17.93 humidity 90 14400 > th dose independent rect. 5 2
469 18.03 radiation 1 14400 < th dose independent rect. 18 14
500 18.10 wind 1 43200 < th dose dependent rect. 10 2
527 18.17 radiation 1 14400 > th dose independent rect. 18 1
535 18.17 humidity 90 14400 < th dose independent rect. 19 9
539 18.17 radiation 1 14400 > th dose independent rect. 18 14
569 18.24 radiation 1 14400 < th dose independent rect. 18 18
596 18.30 radiation 1 14400 > th dose independent rect. 18 18
615 18.33 humidity 90 14400 < th dose independent rect. 23 1
616 18.33 humidity 90 14400 < th dose independent rect. 20 5
625 18.35 humidity 90 14400 < th dose independent rect. 22 3
633 18.37 wind 1 43200 > th dose independent rect. 8 4
641 18.39 wind 3 43200 < th dose independent rect. 13 1
652 18.41 wind 9 43200 < th dose independent rect. 22 3
663 18.41 humidity 90 43200 < th dose dependent rect. 19 5
667 18.42 radiation 1 14400 < th dose independent rect. 18 11
670 18.42 humidity 90 43200 < th dose dependent rect. 19 18
671 18.43 wind 7 43200 < th dose independent rect. 23 1
676 18.43 humidity 90 43200 < th dose dependent rect. 17 12
680 18.44 humidity 70 43200 > th dose independent rect. 18 12
685 18.44 humidity 90 43200 < th dose dependent rect. 18 7
691 18.45 radiation 10 14400 < th dose dependent rect. 24 5
710 18.48 wind 1 43200 > th dose independent rect. 11 1
711 18.48 wind 7 43200 > th dose independent rect. 23 1
712 18.48 wind 1 43200 < th dose independent rect. 2 1
714 18.48 wind 7 43200 > th dose independent rect. 21 7
725 18.49 humidity 90 43200 < th dose dependent rect. 21 1
731 18.49 temperature 25 1440 < th dose dependent rect. 17 19
734 18.50 humidity 90 14400 > th dose independent no NA NA
735 18.50 wind 1 43200 > th dose independent rect. 2 1
739 18.50 humidity 70 43200 > th dose independent rect. 18 8
741 18.50 wind 7 43200 > th dose independent rect. 21 10
744 18.50 wind 5 43200 > th dose dependent rect. 21 7
750 18.51 wind 7 43200 > th dose independent rect. 21 4
752 18.51 wind 7 43200 < th dose independent rect. 21 10
753 18.51 wind 7 43200 > th dose independent rect. 21 12
754 18.51 wind 7 43200 < th dose independent rect. 21 12
757 18.51 humidity 90 43200 < th dose dependent sin 13 NA
758 18.51 wind 7 43200 > th dose dependent rect. 21 4
771 18.52 radiation 1 14400 < th dose dependent rect. 4 8
788 18.53 radiation 1 14400 > th dose independent rect. 5 4
789 18.53 radiation 1 14400 < th dose independent rect. 5 4
810 18.54 radiation 1 14400 < th dose independent sin 9 NA
835 18.55 radiation 1 43200 > th dose independent rect. 11 1
836 18.55 radiation 1 43200 < th dose independent rect. 11 1
844 18.55 radiation 1 14400 > th dose independent rect. 5 7
845 18.55 radiation 1 14400 < th dose independent rect. 5 7
848 18.55 radiation 1 14400 < th dose independent rect. 24 9
862 18.55 radiation 1 43200 < th dose dependent rect. 11 1
864 18.55 radiation 1 14400 < th dose dependent rect. 4 5
876 18.55 temperature 10 1440 > th dose dependent rect. 17 19
877 18.56 wind 3 43200 > th dose independent rect. 13 1
885 18.56 humidity 90 43200 < th dose dependent sin 8 NA
898 18.57 radiation 1 14400 > th dose independent sin 9 NA
929 18.58 wind 3 43200 < th dose independent rect. 12 3
996 18.60 humidity 90 43200 > th dose dependent rect. 11 2