Os01g0952100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Germin-like protein subfamily 2 member 4 precursor.
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Os01g0952100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Germin-like protein subfamily 2 member 4 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 479.12 | 1.03 | 6.44 | -3.9 | 0.664 | -2.09 | 2.79 | -3.74 | -1.04 | 11.2 | 21.09 | 7 | -- | -- |
| 485.16 | 1.03 | 6.38 | -3.3 | 0.661 | -2.28 | 1.96 | -- | -0.903 | 11.1 | 23 | 6 | -- | -- |
| 501.34 | 1.05 | 6.38 | -3.23 | 0.638 | -2.22 | -- | 0.0108 | -0.904 | 11 | 23.01 | 6 | -- | -- |
| 501.22 | 1.04 | 6.38 | -3.24 | 0.637 | -2.21 | -- | -- | -0.911 | 11.1 | 23.14 | 2 | -- | -- |
| 511.46 | 1.05 | 6.35 | -3.25 | -- | -1.84 | -- | -0.161 | -0.855 | -- | 22.16 | 265 | -- | -- |
| 573.26 | 1.12 | 6.45 | -3.67 | 0.674 | -- | 1.72 | -- | -1.22 | 6.9 | -- | -- | -- | -- |
| 578.1 | 1.13 | 6.45 | -3.65 | 0.721 | -- | -- | -- | -1.23 | 5.76 | -- | -- | -- | -- |
| 510.69 | 1.05 | 6.41 | -3.27 | -- | -1.85 | -- | -- | -0.961 | -- | 22.82 | 245 | -- | -- |
| 754.48 | 1.29 | 6.25 | -- | 0.987 | -3.27 | -- | -- | -0.355 | 12.2 | 21.19 | 3 | -- | -- |
| 605.1 | 1.15 | 6.46 | -3.63 | -- | -- | -- | -- | -1.21 | -- | -- | -- | -- | -- |
| 928.79 | 1.43 | 6.36 | -- | 0.666 | -- | -- | -- | -0.825 | 6.02 | -- | -- | -- | -- |
| 769.56 | 1.29 | 6.31 | -- | -- | -2.7 | -- | -- | -0.434 | -- | 18.1 | 540 | -- | -- |
| 951.77 | 1.44 | 6.37 | -- | -- | -- | -- | -- | -0.812 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 468.12 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 13 | 471.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 21 | 472.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 36 | 473.67 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 2 |
| 48 | 474.37 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 53 | 474.72 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 66 | 475.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 73 | 475.64 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 75 | 475.81 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 80 | 475.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 94 | 476.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 98 | 476.32 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 120 | 476.88 | temperature | 25 | 4320 | < th | dose independent | sin | 13 | NA |
| 191 | 478.30 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 204 | 478.52 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 241 | 479.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 249 | 479.20 | temperature | 25 | 4320 | > th | dose independent | sin | 13 | NA |
| 258 | 479.30 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 271 | 479.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 311 | 479.97 | temperature | 30 | 4320 | < th | dose dependent | sin | 12 | NA |
| 351 | 480.34 | temperature | 10 | 4320 | > th | dose dependent | sin | 12 | NA |
| 416 | 480.84 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 450 | 481.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 484 | 481.14 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 499 | 481.15 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 523 | 481.27 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 601 | 481.62 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 653 | 481.86 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 690 | 482.02 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 963 | 483.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |