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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0952000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Germin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7 (0.0913) R2 : 0.651
β1 : -11.2 (0.447) R2dD : 1.05 R2D : 0.418
β2 : 0.765 (0.208) R2dC : 0.0106 R2C : -0.0459
β3 : -0.495 (0.433) R2dE : 0.00179 R2E : -0.0366
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.2 (1.5) R2dD*E : 0.13 R2D*E : -0.438
γ1 : -1.92 (0.2) R2dN8 : 0.118 R2N8 : -0.0593
σ : 1.57
deviance : 1135.52
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_____
C
peak time of C : 2.41
E
wheather : radiation
threshold : 0.8871
memory length : 11200
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1133.98 1.58 7 -11.2 0.763 -0.471 -0.681 -11 -1.92 2.3 0.8901 11207 -- --
1197.04 1.61 6.74 -8.47 0.731 -1.7 -2.48 -- -1.26 2.2 20.01 45721 -- --
1135.52 1.57 7 -11.2 0.765 -0.495 -- -11.2 -1.92 2.41 0.8871 11200 -- --
1192.7 1.61 6.55 -7.82 1.12 -2.45 -- -- -0.517 3.93 10.01 46249 -- --
1169.32 1.59 7 -11.1 -- -0.26 -- -10.9 -1.94 -- 0.88 11197 -- --
1291.34 1.68 6.72 -8.6 0.644 -- -1.89 -- -1.34 1.48 -- -- -- --
1301.57 1.69 6.71 -8.54 0.718 -- -- -- -1.34 2.99 -- -- -- --
1200.47 1.61 6.55 -7.5 -- -2.54 -- -- -0.553 -- 10.01 46299 -- --
2383.79 2.27 6.14 -- 0.594 -5.86 -- -- 1.18 2.59 10 47520 -- --
1331.2 1.7 6.7 -8.51 -- -- -- -- -1.32 -- -- -- -- --
3224.91 2.66 6.49 -- 0.55 -- -- -- -0.388 2.91 -- -- -- --
2404.27 2.28 6.14 -- -- -5.85 -- -- 1.19 -- 10.01 47520 -- --
3242.37 2.66 6.49 -- -- -- -- -- -0.376 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1087.59 wind 1 43200 < th dose dependent rect. 9 4
2 1089.15 wind 1 43200 < th dose dependent rect. 11 2
4 1094.11 humidity 90 43200 < th dose dependent rect. 24 1
14 1098.62 wind 1 43200 < th dose independent rect. 8 6
19 1099.99 humidity 90 43200 < th dose dependent rect. 22 6
28 1101.16 wind 1 43200 > th dose independent rect. 8 6
31 1101.63 wind 1 43200 > th dose independent rect. 8 8
32 1101.68 wind 1 43200 < th dose independent rect. 11 2
36 1102.05 humidity 70 43200 > th dose independent rect. 7 1
40 1102.59 humidity 90 14400 < th dose independent rect. 23 8
49 1103.52 wind 1 43200 < th dose dependent rect. 2 1
63 1105.55 humidity 50 43200 > th dose independent rect. 10 3
76 1107.02 humidity 90 14400 > th dose independent rect. 1 1
77 1107.06 wind 1 43200 < th dose independent rect. 2 1
84 1107.40 wind 3 43200 < th dose dependent rect. 9 12
87 1107.58 wind 1 43200 > th dose independent rect. 12 1
89 1107.58 wind 3 43200 < th dose dependent rect. 11 10
93 1107.97 wind 3 43200 < th dose independent rect. 12 6
95 1108.15 wind 5 43200 < th dose dependent rect. 15 2
99 1108.54 humidity 50 43200 < th dose independent rect. 11 2
104 1108.79 humidity 50 43200 < th dose independent rect. 10 4
113 1109.25 wind 3 43200 > th dose independent rect. 13 14
121 1109.53 wind 1 43200 > th dose independent rect. 11 4
130 1109.83 wind 5 43200 < th dose dependent rect. 13 14
148 1110.73 wind 3 43200 > th dose independent rect. 12 6
155 1110.84 humidity 90 14400 < th dose independent rect. 22 5
165 1111.09 wind 3 43200 < th dose independent rect. 13 14
186 1111.60 wind 3 43200 < th dose independent rect. 12 9
188 1111.61 humidity 90 14400 < th dose independent rect. 23 3
213 1112.09 wind 3 43200 < th dose dependent sin 20 NA
220 1112.28 wind 3 43200 < th dose dependent rect. 9 17
231 1112.48 humidity 80 14400 > th dose dependent rect. 24 2
233 1112.51 humidity 60 43200 < th dose independent rect. 8 2
260 1112.97 wind 1 43200 > th dose independent rect. 8 12
270 1113.22 wind 1 43200 < th dose independent rect. 8 18
288 1113.48 wind 3 43200 < th dose independent rect. 13 11
294 1113.57 humidity 50 43200 > th dose independent rect. 22 17
295 1113.60 humidity 50 43200 > th dose independent rect. 24 15
300 1113.64 humidity 50 43200 > th dose independent rect. 2 13
314 1113.78 wind 3 43200 > th dose independent rect. 13 11
370 1114.31 radiation 10 43200 > th dose independent rect. 17 1
442 1115.08 wind 1 43200 > th dose dependent rect. 15 1
443 1115.09 humidity 50 43200 < th dose independent sin 23 NA
537 1116.16 humidity 50 43200 > th dose independent sin 1 NA
594 1116.88 humidity 50 43200 > th dose independent rect. 10 17
598 1116.92 humidity 50 43200 > th dose independent rect. 10 15
600 1116.93 humidity 90 14400 > th dose independent rect. 5 1
602 1116.93 wind 1 43200 < th dose independent rect. 8 14
606 1116.95 humidity 50 43200 > th dose independent rect. 10 13
627 1117.21 humidity 90 14400 > th dose independent rect. 23 8
630 1117.25 wind 1 43200 < th dose independent rect. 8 12
650 1117.37 wind 3 43200 > th dose independent sin 17 NA
665 1117.57 wind 1 43200 > th dose independent rect. 8 18
677 1117.65 wind 3 43200 < th dose independent sin 18 NA
709 1117.85 wind 1 43200 > th dose dependent rect. 15 4
911 1119.96 wind 1 43200 > th dose independent rect. 2 1
992 1120.82 humidity 50 43200 < th dose independent no NA NA