Os01g0951200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP decarboxylase) (OMPDCase) (OMPdecase) (Uridine 5'-monophosphate synthase) (UMP synthase).
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Os01g0951200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP decarboxylase) (OMPDCase) (OMPdecase) (Uridine 5'-monophosphate synthase) (UMP synthase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.82 | 0.378 | 11.1 | 1.13 | 1.89 | 1.22 | 0.353 | -1.54 | 0.039 | 18.7 | 25.58 | 83 | -- | -- |
| 65.57 | 0.377 | 11.1 | 1.3 | 1.9 | 1.08 | 0.264 | -- | 0.0756 | 18.7 | 25.5 | 78 | -- | -- |
| 65.11 | 0.376 | 11.1 | 1.15 | 1.9 | 1.21 | -- | -1.31 | 0.0464 | 18.7 | 25.6 | 78 | -- | -- |
| 65.74 | 0.378 | 11.1 | 1.29 | 1.89 | 1.1 | -- | -- | 0.0784 | 18.7 | 25.5 | 78 | -- | -- |
| 170.98 | 0.609 | 11.2 | 0.519 | -- | 2.73 | -- | -4.62 | -0.229 | -- | 24.6 | 369 | -- | -- |
| 84.04 | 0.43 | 11.1 | 1.48 | 2.21 | -- | 0.706 | -- | 0.14 | 18.2 | -- | -- | -- | -- |
| 85.27 | 0.432 | 11.1 | 1.47 | 2.21 | -- | -- | -- | 0.142 | 18.2 | -- | -- | -- | -- |
| 178.16 | 0.622 | 11.1 | 1.02 | -- | 2.35 | -- | -- | -0.118 | -- | 24.5 | 343 | -- | -- |
| 108 | 0.484 | 11.2 | -- | 1.8 | 1.4 | -- | -- | -0.0933 | 19 | 25.27 | 74 | -- | -- |
| 338.46 | 0.86 | 11.1 | 1.41 | -- | -- | -- | -- | 0.0932 | -- | -- | -- | -- | -- |
| 142.08 | 0.558 | 11.1 | -- | 2.19 | -- | -- | -- | -0.0214 | 18.2 | -- | -- | -- | -- |
| 204.88 | 0.667 | 11.1 | -- | -- | 2.5 | -- | -- | -0.248 | -- | 24.37 | 360 | -- | -- |
| 390.65 | 0.923 | 11.1 | -- | -- | -- | -- | -- | -0.0628 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 4 | 59.63 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 17 |
| 5 | 59.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 27 | 61.17 | temperature | 25 | 90 | > th | dose dependent | sin | 0 | NA |
| 29 | 61.38 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 13 |
| 56 | 61.94 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 65 | 61.99 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 20 |
| 92 | 62.26 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 221 | 63.08 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 421 | 64.72 | temperature | 25 | 90 | > th | dose dependent | rect. | 2 | 19 |
| 445 | 64.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 523 | 65.21 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 529 | 65.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 576 | 65.50 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 18 |
| 630 | 65.70 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 5 |
| 655 | 65.78 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 664 | 65.84 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 16 |
| 681 | 65.89 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 7 |
| 731 | 66.10 | humidity | 70 | 90 | > th | dose independent | rect. | 5 | 18 |
| 802 | 66.38 | humidity | 70 | 270 | > th | dose independent | rect. | 3 | 16 |
| 843 | 66.53 | humidity | 60 | 30 | > th | dose dependent | rect. | 6 | 17 |
| 961 | 66.96 | radiation | 40 | 270 | < th | dose dependent | rect. | 12 | 22 |
| 1000 | 67.12 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 5 |