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Os01g0950700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pathogen-induced calmodulin-binding protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.75 (0.0446) R2 : 0.754
β1 : 5.45 (0.164) R2dD : 0.636 R2D : 0.634
β2 : 1.33 (0.125) R2dC : 0.079 R2C : 0.00373
β3 : 1.69 (0.17) R2dE : 0.071 R2E : 0.0209
β4 : -2.38 (0.442) R2dD*C : 0.0158 R2D*C : 0.0346
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.553 (0.0949) R2dN8 : 0.0253 R2N8 : -0.0201
σ : 0.831
deviance : 318.01
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_____
C
peak time of C : 21.3
E
wheather : radiation
threshold : 0.14
memory length : 7
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 4.31
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
313.98 0.833 8.75 5.36 1.34 1.79 -2.98 -2.08 0.547 21.3 0.158 8 4.35 --
318.01 0.831 8.75 5.45 1.33 1.69 -2.38 -- 0.553 21.3 0.14 7 4.31 --
338.4 0.857 8.75 5.54 1.43 1.85 -- 0.457 0.604 21.1 0.17 7 4.12 --
338.09 0.856 8.75 5.57 1.35 1.72 -- -- 0.565 21.2 0.1465 7 4.23 --
404.49 0.942 8.69 5.65 -- 0.97 -- 0.65 0.619 -- 0.14 7 5.88 --
381.93 0.916 8.71 5.57 0.754 -- -2.28 -- 0.615 22.6 -- -- -- --
403.19 0.94 8.71 5.66 0.764 -- -- -- 0.62 22.9 -- -- -- --
401.71 0.933 8.68 5.63 -- 1.01 -- -- 0.615 -- 0.17 7 6.01 --
1164.04 1.6 8.87 -- 1.41 1.89 -- -- -0.0193 21.4 0.1465 7 4.23 --
439.41 0.979 8.69 5.68 -- -- -- -- 0.626 -- -- -- -- --
1248.63 1.65 8.85 -- 0.816 -- -- -- -0.0103 23.3 -- -- -- --
1220.66 1.63 8.83 -- -- 1.43 -- -- -0.0252 -- 0.36 2 5.86 --
1290.39 1.68 8.83 -- -- -- -- -- -0.00463 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 304.03 radiation 10.0 270 < th dose dependent rect. 5 1
2 304.84 radiation 40.0 30 < th dose dependent rect. 5 6
4 305.46 radiation 40.0 30 < th dose dependent rect. 5 13
5 306.27 radiation 30.0 90 < th dose independent rect. 4 7
7 306.71 wind 9.0 90 < th dose dependent rect. 9 19
8 306.74 humidity 50.0 30 > th dose dependent rect. 5 13
10 306.87 radiation 10.0 270 < th dose independent rect. 4 2
12 307.18 wind 9.0 270 < th dose independent rect. 6 22
13 307.46 radiation 10.0 270 < th dose dependent rect. 3 12
14 307.67 radiation 10.0 270 < th dose dependent rect. 3 14
22 308.47 wind 7.0 10 < th dose independent rect. 9 20
32 309.31 humidity 70.0 90 > th dose independent rect. 4 5
39 309.80 precipitation 0.1 270 < th dose independent rect. 6 22
40 309.80 precipitation 0.1 270 < th dose dependent rect. 6 22
44 309.99 humidity 60.0 30 > th dose dependent rect. 5 6
69 311.31 radiation 40.0 10 < th dose dependent rect. 5 19
79 311.66 temperature 15.0 90 > th dose independent rect. 9 19
86 311.85 atmosphere 1015.0 30 < th dose independent rect. 9 20
92 312.15 humidity 50.0 270 > th dose dependent rect. 4 2
93 312.16 temperature 20.0 270 > th dose independent rect. 4 2
102 312.41 radiation 1.0 270 < th dose independent rect. 4 11
115 312.77 wind 9.0 270 < th dose independent rect. 4 2
116 312.77 temperature 10.0 270 > th dose independent rect. 4 2
118 312.77 temperature 30.0 270 < th dose independent rect. 4 2
119 312.77 humidity 50.0 270 > th dose independent rect. 4 2
122 312.77 atmosphere 995.0 270 > th dose independent rect. 4 2
123 312.77 atmosphere 1015.0 270 < th dose independent rect. 4 2
127 312.77 temperature 10.0 270 > th dose independent rect. 6 22
129 312.90 wind 7.0 270 < th dose independent rect. 7 20
152 313.59 precipitation 0.1 270 < th dose independent rect. 4 2
153 313.59 precipitation 0.1 270 < th dose dependent rect. 4 2
157 313.80 wind 5.0 270 < th dose independent rect. 17 10
170 314.11 temperature 10.0 270 > th dose dependent rect. 4 2
173 314.21 temperature 30.0 90 < th dose independent rect. 4 5
190 314.64 radiation 20.0 90 < th dose independent rect. 4 14
193 314.70 temperature 10.0 30 > th dose dependent rect. 9 20
202 314.87 atmosphere 1015.0 270 < th dose independent rect. 7 20
204 314.90 wind 1.0 270 > th dose independent rect. 4 2
211 315.10 wind 9.0 90 < th dose dependent rect. 18 10
222 315.25 temperature 15.0 270 > th dose independent rect. 7 20
233 315.56 precipitation 0.1 90 < th dose independent rect. 9 19
234 315.56 precipitation 0.1 90 < th dose dependent rect. 9 19
262 316.18 wind 9.0 30 < th dose independent rect. 5 4
263 316.18 temperature 10.0 30 > th dose independent rect. 5 4
268 316.18 atmosphere 995.0 30 > th dose independent rect. 5 4
269 316.18 atmosphere 1015.0 30 < th dose independent rect. 5 4
277 316.41 precipitation 0.1 30 < th dose independent rect. 5 4
279 316.41 precipitation 0.1 30 < th dose dependent rect. 5 4
303 316.85 atmosphere 1015.0 30 < th dose dependent rect. 5 4
305 316.87 precipitation 0.1 270 < th dose independent rect. 7 20
306 316.87 precipitation 0.1 270 < th dose dependent rect. 7 20
309 316.92 atmosphere 1015.0 270 < th dose independent rect. 6 22
310 316.93 humidity 70.0 30 > th dose independent rect. 5 13
313 316.95 temperature 10.0 270 > th dose dependent rect. 18 9
342 317.28 radiation 30.0 10 < th dose independent rect. 5 19
347 317.40 atmosphere 995.0 30 > th dose independent rect. 9 20
368 317.68 radiation 10.0 10 > th dose dependent rect. 13 23
373 317.75 radiation 40.0 10 < th dose dependent rect. 5 21
387 318.02 atmosphere 1015.0 270 < th dose dependent rect. 4 2
450 318.69 humidity 60.0 30 > th dose dependent rect. 5 9
490 319.03 radiation 40.0 10 < th dose dependent rect. 5 16
493 319.09 wind 9.0 10 < th dose dependent rect. 11 18
529 319.64 radiation 30.0 10 < th dose independent rect. 5 16
549 319.94 radiation 1.0 10 > th dose dependent rect. 9 3
554 320.01 wind 1.0 10 > th dose independent rect. 5 4
565 320.12 temperature 10.0 1440 > th dose independent rect. 6 4
568 320.12 atmosphere 995.0 1440 > th dose independent rect. 6 4
569 320.12 atmosphere 1015.0 1440 < th dose independent rect. 6 4
570 320.12 temperature 10.0 1440 > th dose independent rect. 10 20
631 320.60 radiation 10.0 10 > th dose dependent rect. 15 21
665 321.20 temperature 10.0 30 > th dose dependent rect. 5 4
701 321.52 wind 9.0 30 < th dose dependent rect. 5 4
784 322.24 wind 7.0 10 < th dose independent rect. 11 18
815 322.48 wind 9.0 270 < th dose dependent rect. 4 2