Os01g0950300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutathione S-transferase GST 29 (EC 2.5.1.18).
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Os01g0950300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glutathione S-transferase GST 29 (EC 2.5.1.18).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.39 | 0.507 | 11.8 | 2.93 | 1.83 | 0.869 | 0.238 | -0.318 | 0.961 | 20.5 | 21.59 | 1433 | -- | -- |
| 116.6 | 0.503 | 11.9 | 2.91 | 1.83 | 0.853 | 0.227 | -- | 0.945 | 20.5 | 22.03 | 1431 | -- | -- |
| 116.57 | 0.503 | 11.8 | 2.93 | 1.83 | 0.866 | -- | -0.327 | 0.961 | 20.5 | 21.71 | 1431 | -- | -- |
| 116.78 | 0.503 | 11.9 | 2.89 | 1.83 | 0.859 | -- | -- | 0.945 | 20.5 | 21.87 | 1431 | -- | -- |
| 234.06 | 0.716 | 11.9 | 2.71 | -- | 0.948 | -- | -0.537 | 0.725 | -- | 7.067 | 1543 | -- | -- |
| 142.57 | 0.56 | 11.9 | 2.77 | 1.81 | -- | 0.179 | -- | 0.725 | 20.4 | -- | -- | -- | -- |
| 142.67 | 0.559 | 11.9 | 2.76 | 1.81 | -- | -- | -- | 0.725 | 20.4 | -- | -- | -- | -- |
| 235.04 | 0.717 | 11.8 | 2.73 | -- | 0.945 | -- | -- | 0.731 | -- | 6.366 | 1546 | -- | -- |
| 301.29 | 0.808 | 11.9 | -- | 1.82 | 1.13 | -- | -- | 0.632 | 20.6 | 60 | 31055 | -- | -- |
| 325.27 | 0.843 | 11.9 | 2.75 | -- | -- | -- | -- | 0.706 | -- | -- | -- | -- | -- |
| 343.53 | 0.867 | 12 | -- | 1.8 | -- | -- | -- | 0.417 | 20.5 | -- | -- | -- | -- |
| 431.09 | 0.97 | 11.9 | -- | -- | 0.963 | -- | -- | 0.429 | -- | 6.366 | 1546 | -- | -- |
| 524.79 | 1.07 | 11.9 | -- | -- | -- | -- | -- | 0.401 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 115.46 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 22 |
| 6 | 115.76 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 7 | 115.78 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 10 | 115.83 | radiation | 20 | 1440 | < th | dose dependent | sin | 4 | NA |
| 13 | 115.85 | radiation | 20 | 1440 | < th | dose dependent | rect. | 6 | 8 |
| 15 | 115.87 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 17 | 115.91 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 42 | 115.97 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 54 | 116.08 | radiation | 10 | 1440 | > th | dose independent | sin | 6 | NA |
| 57 | 116.09 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 88 | 116.21 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 91 | 116.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 100 | 116.25 | radiation | 20 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 113 | 116.30 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 114 | 116.30 | radiation | 20 | 1440 | < th | dose dependent | rect. | 1 | 17 |
| 122 | 116.31 | radiation | 20 | 1440 | < th | dose dependent | rect. | 3 | 15 |
| 136 | 116.32 | radiation | 20 | 1440 | < th | dose dependent | rect. | 6 | 12 |
| 148 | 116.33 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 200 | 116.42 | radiation | 20 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 206 | 116.43 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 278 | 116.54 | radiation | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 461 | 116.87 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 519 | 117.01 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 520 | 117.01 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 561 | 117.07 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 640 | 117.20 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 646 | 117.21 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 647 | 117.21 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 15 |
| 651 | 117.21 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 677 | 117.22 | radiation | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 756 | 117.25 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 870 | 117.32 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 21 |