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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0949800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutathione S-transferase GST 28 (EC 2.5.1.18) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0388) R2 : 0.0146
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.212 (0.0817) R2dN8 : 0.0189 R2N8 : 0.0146
σ : 0.731
deviance : 245.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
237.24 0.724 2.86 -0.0565 0.0736 0.467 0.811 2 0.229 15.4 28.69 257 -- --
240.18 0.722 2.83 0.362 0.0452 0.447 -0.103 -- 0.291 4.87 39.1 772 -- --
238.02 0.719 2.86 -0.00309 0.0661 0.424 -- 1.57 0.222 3.56 30.26 769 -- --
240.07 0.722 2.82 0.335 0.0932 0.47 -- -- 0.312 3.52 36.31 888 -- --
238.16 0.719 2.86 0.0263 -- 0.462 -- 1.54 0.239 -- 30.1 723 -- --
243.24 0.731 2.84 0.205 0.11 -- -0.0733 -- 0.233 6.4 -- -- -- --
243.25 0.73 2.84 0.204 0.11 -- -- -- 0.233 6.72 -- -- -- --
240.32 0.722 2.82 0.328 -- 0.476 -- -- 0.308 -- 35.54 739 -- --
242.65 0.725 2.83 -- 0.0746 0.34 -- -- 0.255 3.84 57.64 796 -- --
243.88 0.73 2.84 0.207 -- -- -- -- 0.235 -- -- -- -- --
244.35 0.731 2.84 -- 0.113 -- -- -- 0.21 6.61 -- -- -- --
242.87 0.726 2.84 -- -- 0.351 -- -- 0.256 -- 62.02 716 -- --
245.01 0.731 2.84 -- -- -- -- -- 0.212 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 220.92 wind 9.0 10 > th dose independent rect. 13 1
15 220.92 wind 9.0 10 > th dose dependent rect. 13 1
35 222.94 temperature 25.0 90 > th dose dependent rect. 1 3
38 223.37 temperature 25.0 90 > th dose independent rect. 1 3
42 223.89 radiation 1.0 43200 < th dose dependent rect. 3 1
50 224.78 atmosphere 1000.0 30 > th dose independent rect. 3 23
55 224.86 wind 9.0 1440 < th dose independent rect. 3 1
56 224.86 temperature 10.0 1440 > th dose independent rect. 3 1
59 224.86 temperature 30.0 1440 < th dose independent rect. 3 1
63 224.86 humidity 50.0 1440 > th dose independent rect. 3 1
72 224.86 atmosphere 995.0 1440 > th dose independent rect. 3 1
73 224.86 radiation 1.0 1440 < th dose independent rect. 3 1
93 224.86 temperature 10.0 1440 > th dose independent rect. 4 23
96 224.86 radiation 1.0 1440 < th dose dependent rect. 3 1
106 225.04 atmosphere 1005.0 30 > th dose dependent rect. 2 1
108 225.10 wind 3.0 30 < th dose dependent rect. 2 1
110 225.14 wind 1.0 30 < th dose independent rect. 2 1
113 225.16 temperature 20.0 30 > th dose independent rect. 2 1
121 225.20 atmosphere 1005.0 30 > th dose independent rect. 2 1
124 225.21 humidity 90.0 30 > th dose independent rect. 2 1
127 225.22 radiation 10.0 90 < th dose dependent rect. 9 1
128 225.23 temperature 25.0 30 < th dose independent rect. 2 1
130 225.24 humidity 50.0 30 > th dose dependent rect. 2 1
135 225.25 temperature 10.0 30 > th dose independent rect. 2 1
138 225.25 humidity 50.0 30 > th dose independent rect. 2 1
141 225.25 atmosphere 995.0 30 > th dose independent rect. 2 1
142 225.25 atmosphere 1010.0 30 < th dose independent rect. 2 1
144 225.25 radiation 1.0 30 < th dose independent rect. 2 1
149 225.25 precipitation 0.1 30 < th dose independent rect. 2 1
150 225.25 temperature 10.0 30 > th dose independent rect. 3 23
151 225.25 radiation 1.0 30 < th dose dependent rect. 2 1
156 225.25 precipitation 0.1 30 < th dose dependent rect. 2 1
163 225.39 wind 7.0 10 > th dose dependent rect. 9 1
168 225.41 atmosphere 1015.0 30 < th dose dependent rect. 2 1
172 225.58 temperature 30.0 30 < th dose dependent rect. 2 1
184 225.89 wind 1.0 30 > th dose independent rect. 2 1
228 226.26 precipitation 0.1 30 < th dose independent rect. 3 23
229 226.26 precipitation 0.1 30 < th dose dependent rect. 3 23
232 226.71 wind 7.0 10 < th dose independent rect. 3 23
251 227.65 radiation 30.0 10 > th dose independent rect. 13 1
266 228.34 temperature 25.0 90 < th dose dependent rect. 14 1
285 229.20 humidity 90.0 90 > th dose independent rect. 14 1
288 229.20 humidity 90.0 90 > th dose dependent rect. 14 1
294 229.28 radiation 1.0 10 < th dose independent rect. 13 3
300 229.29 radiation 1.0 10 < th dose independent rect. 15 1
310 229.31 wind 7.0 10 > th dose independent rect. 9 1
346 229.71 radiation 20.0 10 > th dose dependent rect. 13 1
348 229.74 atmosphere 1015.0 30 < th dose independent rect. 3 23
350 229.78 radiation 40.0 30 > th dose dependent rect. 13 1
370 229.81 temperature 25.0 10 < th dose independent rect. 14 2
372 229.82 temperature 25.0 90 < th dose independent rect. 14 1
395 229.95 humidity 50.0 30 > th dose independent rect. 3 23
396 229.98 wind 9.0 10 < th dose dependent rect. 3 23
403 230.15 radiation 10.0 90 < th dose independent rect. 9 1
416 230.63 temperature 10.0 30 > th dose dependent rect. 3 23
424 230.79 radiation 1.0 10 < th dose dependent rect. 15 1
434 230.89 radiation 10.0 90 < th dose dependent rect. 14 2
518 231.89 temperature 20.0 10 > th dose independent rect. 2 4
573 232.54 radiation 20.0 1440 > th dose independent rect. 16 1
630 233.08 atmosphere 1005.0 30 > th dose dependent rect. 15 1
660 233.21 temperature 25.0 270 < th dose dependent rect. 12 4
679 233.32 temperature 25.0 270 < th dose independent rect. 11 5
700 233.45 temperature 30.0 30 < th dose independent rect. 3 23
707 233.48 wind 7.0 10 > th dose independent rect. 13 21
717 233.60 wind 1.0 30 < th dose independent rect. 24 3
754 233.91 atmosphere 1005.0 10 < th dose dependent rect. 5 1
825 234.45 radiation 1.0 10 < th dose independent rect. 13 13
830 234.47 radiation 1.0 10 < th dose independent rect. 15 11
832 234.47 wind 5.0 10 < th dose independent rect. 6 20
873 234.68 radiation 10.0 270 < th dose dependent rect. 12 4
876 234.74 radiation 1.0 10 < th dose independent rect. 6 20
889 234.80 radiation 1.0 10 < th dose independent rect. 6 11
907 234.91 radiation 10.0 30 < th dose dependent rect. 2 9
929 235.01 wind 1.0 10 < th dose independent rect. 15 12
933 235.01 wind 7.0 10 < th dose dependent rect. 6 13
934 235.01 wind 9.0 10 < th dose dependent rect. 6 20
936 235.02 wind 1.0 10 < th dose independent rect. 17 10
941 235.03 wind 1.0 10 < th dose independent rect. 21 6
973 235.08 radiation 10.0 30 < th dose dependent rect. 14 12
977 235.10 wind 3.0 30 < th dose dependent rect. 2 4
992 235.16 wind 7.0 10 < th dose dependent rect. 6 10