Os01g0949400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phytochromobilin synthase precursor.
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Os01g0949400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phytochromobilin synthase precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.92 | 0.351 | 9.47 | -0.681 | 0.645 | 0.936 | -0.977 | 0.994 | -0.384 | 13.1 | 21.22 | 9 | -- | -- |
| 56.39 | 0.352 | 9.49 | -0.852 | 0.635 | 0.993 | -0.701 | -- | -0.433 | 13.1 | 21.4 | 12 | -- | -- |
| 58.35 | 0.359 | 9.49 | -0.907 | 0.641 | 0.999 | -- | -0.214 | -0.442 | 12.9 | 21.58 | 10 | -- | -- |
| 58.38 | 0.358 | 9.49 | -0.874 | 0.643 | 0.972 | -- | -- | -0.433 | 12.9 | 21.4 | 12 | -- | -- |
| 76 | 0.408 | 9.53 | -1.1 | -- | 1.6 | -- | -0.582 | -0.565 | -- | 21.21 | 5 | -- | -- |
| 71.96 | 0.398 | 9.45 | -0.657 | 0.995 | -- | -0.55 | -- | -0.268 | 13.5 | -- | -- | -- | -- |
| 73.17 | 0.401 | 9.45 | -0.676 | 0.994 | -- | -- | -- | -0.272 | 13.5 | -- | -- | -- | -- |
| 76.29 | 0.409 | 9.52 | -1 | -- | 1.54 | -- | -- | -0.535 | -- | 21.4 | 12 | -- | -- |
| 77.09 | 0.411 | 9.46 | -- | 0.755 | 0.704 | -- | -- | -0.293 | 13.1 | 21.9 | 2 | -- | -- |
| 133.84 | 0.541 | 9.47 | -0.715 | -- | -- | -- | -- | -0.293 | -- | -- | -- | -- | -- |
| 85.22 | 0.432 | 9.44 | -- | 1.01 | -- | -- | -- | -0.196 | 13.5 | -- | -- | -- | -- |
| 101.87 | 0.472 | 9.49 | -- | -- | 1.36 | -- | -- | -0.393 | -- | 21.66 | 7 | -- | -- |
| 147.34 | 0.567 | 9.45 | -- | -- | -- | -- | -- | -0.214 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 6 | 55.64 | temperature | 20 | 10 | > th | dose dependent | sin | 6 | NA |
| 10 | 55.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 11 | 55.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 12 | 56.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 14 | 56.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 17 | 56.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 20 | 56.31 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 24 | 56.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 27 | 56.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 28 | 56.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 29 | 56.48 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 31 | 56.51 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 35 | 56.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 36 | 56.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 37 | 56.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 40 | 56.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 44 | 56.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 54 | 57.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 56 | 57.08 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 60 | 57.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 62 | 57.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 64 | 57.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 66 | 57.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 67 | 57.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 70 | 57.29 | wind | 9 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 75 | 57.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 91 | 57.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 92 | 57.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 109 | 57.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 115 | 57.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 165 | 57.78 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 175 | 57.81 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 176 | 57.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 206 | 57.95 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 212 | 57.99 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 234 | 58.07 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 238 | 58.10 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 240 | 58.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 18 |
| 245 | 58.12 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 280 | 58.20 | temperature | 25 | 30 | > th | dose independent | rect. | 17 | 23 |
| 287 | 58.21 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 23 |
| 311 | 58.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 312 | 58.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 314 | 58.31 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 324 | 58.35 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 325 | 58.35 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 392 | 58.47 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 396 | 58.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 407 | 58.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 417 | 58.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 422 | 58.53 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 528 | 58.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 529 | 58.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 561 | 58.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 586 | 58.68 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 714 | 58.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 735 | 58.81 | radiation | 10 | 1440 | > th | dose independent | sin | 23 | NA |
| 755 | 58.83 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 758 | 58.83 | temperature | 30 | 1440 | < th | dose dependent | sin | 21 | NA |
| 772 | 58.84 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 773 | 58.84 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 840 | 58.88 | temperature | 25 | 1440 | > th | dose independent | rect. | 24 | 21 |
| 844 | 58.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 878 | 58.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 21 |
| 988 | 58.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |