Os01g0948600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0948600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.91 | 0.308 | 13.7 | -0.759 | 0.827 | -1.89 | -0.342 | -0.138 | -0.0263 | 0.0229 | 1.054 | 725 | -- | -- |
| 42.91 | 0.305 | 13.7 | -0.767 | 0.81 | -1.93 | -0.356 | -- | -0.0294 | 0.12 | 1.03 | 731 | -- | -- |
| 43.4 | 0.307 | 13.7 | -0.745 | 0.819 | -1.9 | -- | -0.179 | -0.0295 | 24 | 1.22 | 731 | -- | -- |
| 43.44 | 0.307 | 13.7 | -0.746 | 0.803 | -1.91 | -- | -- | -0.0266 | 0.0333 | 1.217 | 733 | -- | -- |
| 48.1 | 0.323 | 13.7 | -0.829 | -- | -2.41 | -- | -0.00417 | -0.0657 | -- | 1.83 | 949 | -- | -- |
| 49.81 | 0.331 | 13.7 | -0.591 | 1.67 | -- | 0.0772 | -- | 0.0495 | 19.7 | -- | -- | -- | -- |
| 49.83 | 0.331 | 13.7 | -0.593 | 1.67 | -- | -- | -- | 0.0496 | 19.7 | -- | -- | -- | -- |
| 48.05 | 0.323 | 13.7 | -0.821 | -- | -2.4 | -- | -- | -0.0728 | -- | 1.793 | 953 | -- | -- |
| 56.68 | 0.351 | 13.7 | -- | 0.892 | -1.29 | -- | -- | 0.0438 | 21.9 | 1.773 | 723 | -- | -- |
| 199.9 | 0.661 | 13.6 | -0.615 | -- | -- | -- | -- | 0.0253 | -- | -- | -- | -- | -- |
| 59.1 | 0.36 | 13.7 | -- | 1.67 | -- | -- | -- | 0.116 | 19.7 | -- | -- | -- | -- |
| 65.09 | 0.376 | 13.6 | -- | -- | -2.31 | -- | -- | 0.00772 | -- | 2.338 | 932 | -- | -- |
| 209.87 | 0.676 | 13.6 | -- | -- | -- | -- | -- | 0.0935 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.08 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 2 | 42.11 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 4 | 42.27 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 18 |
| 5 | 42.29 | radiation | 1 | 720 | < th | dose dependent | sin | 13 | NA |
| 8 | 42.42 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 9 | 42.43 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 10 | 42.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 19 | 42.62 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 28 | 42.71 | radiation | 1 | 720 | < th | dose independent | rect. | 19 | 23 |
| 29 | 42.71 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 18 |
| 32 | 42.74 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 35 | 42.76 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 21 |
| 36 | 42.77 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 19 |
| 44 | 42.83 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 50 | 42.84 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 23 |
| 63 | 42.91 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 16 |
| 69 | 42.93 | radiation | 1 | 720 | < th | dose independent | sin | 13 | NA |
| 73 | 42.94 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 77 | 42.98 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 18 |
| 84 | 43.04 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 15 |
| 87 | 43.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 101 | 43.13 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 102 | 43.13 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 104 | 43.15 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 23 |
| 111 | 43.18 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 119 | 43.20 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 159 | 43.33 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 160 | 43.33 | radiation | 1 | 720 | > th | dose independent | rect. | 4 | 15 |
| 224 | 43.37 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 255 | 43.42 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 262 | 43.50 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 19 |
| 265 | 43.51 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 283 | 43.59 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 291 | 43.67 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 23 |
| 301 | 43.74 | radiation | 1 | 720 | > th | dose independent | sin | 0 | NA |
| 303 | 43.74 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 23 |
| 354 | 43.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 9 |
| 355 | 43.84 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 413 | 44.03 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 1 |
| 421 | 44.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 422 | 44.06 | humidity | 80 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 449 | 44.18 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 23 |
| 459 | 44.21 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 10 |
| 467 | 44.22 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 469 | 44.23 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 478 | 44.28 | wind | 7 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 481 | 44.28 | humidity | 90 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 484 | 44.29 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 492 | 44.30 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 496 | 44.32 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 504 | 44.32 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 506 | 44.33 | wind | 7 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 516 | 44.36 | wind | 7 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 517 | 44.36 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 518 | 44.36 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 521 | 44.37 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 1 |
| 523 | 44.37 | wind | 7 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 560 | 44.44 | humidity | 80 | 1440 | > th | dose independent | rect. | 14 | 4 |
| 563 | 44.44 | wind | 7 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 583 | 44.48 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 589 | 44.50 | humidity | 90 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 601 | 44.51 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 608 | 44.52 | wind | 7 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 611 | 44.53 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 612 | 44.53 | humidity | 80 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 617 | 44.53 | humidity | 80 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 632 | 44.56 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 638 | 44.57 | humidity | 90 | 1440 | > th | dose independent | sin | 19 | NA |
| 677 | 44.61 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 691 | 44.62 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 704 | 44.63 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 725 | 44.64 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 5 |
| 726 | 44.64 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 5 |
| 740 | 44.65 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 741 | 44.65 | humidity | 80 | 1440 | > th | dose dependent | sin | 21 | NA |
| 743 | 44.65 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 748 | 44.65 | wind | 7 | 14400 | > th | dose dependent | rect. | 24 | 16 |
| 801 | 44.70 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 1 |
| 823 | 44.71 | wind | 7 | 14400 | > th | dose independent | rect. | 24 | 16 |
| 850 | 44.74 | humidity | 90 | 1440 | < th | dose independent | sin | 20 | NA |
| 871 | 44.75 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 911 | 44.77 | wind | 9 | 14400 | > th | dose dependent | rect. | 19 | 20 |
| 935 | 44.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 978 | 44.82 | wind | 7 | 14400 | > th | dose independent | sin | 2 | NA |
| 979 | 44.82 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 18 |