Os01g0948200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GRAS transcription factor domain containing protein.
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Os01g0948200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GRAS transcription factor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.82 | 0.384 | 12.8 | 1.19 | 1.53 | -1.21 | -0.547 | 2.57 | 0.0748 | 12.8 | 25.54 | 264 | -- | -- |
| 68.49 | 0.385 | 12.8 | 0.877 | 1.5 | -0.966 | -0.434 | -- | -0.0175 | 12.7 | 25.93 | 255 | -- | -- |
| 67.91 | 0.384 | 12.8 | 1.14 | 1.52 | -1.22 | -- | 2.4 | 0.0489 | 12.9 | 25.89 | 283 | -- | -- |
| 69.23 | 0.388 | 12.8 | 0.87 | 1.51 | -0.997 | -- | -- | -0.0108 | 12.8 | 25.8 | 254 | -- | -- |
| 150.06 | 0.571 | 12.7 | 1.56 | -- | -1.44 | -- | 2.21 | 0.258 | -- | 21.85 | 881 | -- | -- |
| 84.14 | 0.43 | 12.8 | 0.74 | 1.35 | -- | -0.64 | -- | -0.0528 | 11.7 | -- | -- | -- | -- |
| 85.91 | 0.434 | 12.8 | 0.715 | 1.36 | -- | -- | -- | -0.0551 | 11.7 | -- | -- | -- | -- |
| 155.45 | 0.581 | 12.8 | 1.03 | -- | -1.24 | -- | -- | 0.148 | -- | 22.2 | 893 | -- | -- |
| 88.28 | 0.438 | 12.8 | -- | 1.43 | -0.8 | -- | -- | -0.118 | 12.5 | 26.3 | 263 | -- | -- |
| 201.48 | 0.663 | 12.8 | 0.676 | -- | -- | -- | -- | -0.0715 | -- | -- | -- | -- | -- |
| 99.38 | 0.466 | 12.8 | -- | 1.35 | -- | -- | -- | -0.135 | 11.7 | -- | -- | -- | -- |
| 180.79 | 0.626 | 12.8 | -- | -- | -1.04 | -- | -- | -0.0553 | -- | 24.1 | 887 | -- | -- |
| 213.54 | 0.682 | 12.9 | -- | -- | -- | -- | -- | -0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.72 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 20 |
| 2 | 65.74 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 22 |
| 28 | 66.39 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 15 |
| 30 | 66.42 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 10 |
| 37 | 66.46 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 50 | 66.73 | temperature | 25 | 270 | > th | dose dependent | sin | 21 | NA |
| 64 | 66.94 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 79 | 67.11 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 83 | 67.13 | temperature | 25 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 166 | 67.62 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 184 | 67.72 | temperature | 10 | 270 | > th | dose dependent | sin | 21 | NA |
| 240 | 68.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 268 | 68.33 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 279 | 68.39 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 336 | 68.70 | temperature | 30 | 270 | < th | dose independent | sin | 21 | NA |
| 366 | 68.84 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 379 | 68.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 417 | 69.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 420 | 69.04 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 428 | 69.06 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 439 | 69.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 15 |
| 459 | 69.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 463 | 69.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 467 | 69.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 9 |
| 475 | 69.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 478 | 69.19 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 480 | 69.20 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 509 | 69.26 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 537 | 69.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 539 | 69.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 19 |
| 541 | 69.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 13 |
| 551 | 69.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 16 |
| 631 | 69.39 | radiation | 1 | 14400 | > th | dose independent | sin | 3 | NA |
| 649 | 69.40 | radiation | 1 | 14400 | < th | dose independent | sin | 3 | NA |
| 695 | 69.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 728 | 69.46 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 732 | 69.47 | humidity | 70 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 742 | 69.48 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 8 |
| 790 | 69.51 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 21 |
| 793 | 69.51 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 795 | 69.51 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 799 | 69.52 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 867 | 69.53 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 4 |
| 888 | 69.53 | radiation | 1 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 897 | 69.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 916 | 69.55 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 19 |
| 921 | 69.55 | radiation | 1 | 14400 | < th | dose independent | rect. | 11 | 21 |
| 933 | 69.56 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 949 | 69.56 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 17 |