Os01g0947700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Beta-1,3-glucanase.
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Os01g0947700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Beta-1,3-glucanase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.99 | 0.517 | 6.74 | 3.26 | 0.0664 | -1.45 | 0.918 | 5.45 | 1.11 | 22.4 | 25.6 | 1417 | -- | -- |
| 132.97 | 0.537 | 6.86 | 1.91 | 0.0293 | -1.01 | 0.83 | -- | 1.06 | 22.6 | 22.78 | 8745 | -- | -- |
| 124.2 | 0.519 | 6.73 | 3.27 | 0.092 | -1.43 | -- | 5.54 | 1.13 | 19.2 | 25.54 | 1451 | -- | -- |
| 135.57 | 0.542 | 6.86 | 1.77 | 0.073 | -0.935 | -- | -- | 1.01 | 17.8 | 25.51 | 8790 | -- | -- |
| 124.63 | 0.52 | 6.73 | 3.27 | -- | -1.44 | -- | 5.59 | 1.12 | -- | 25.59 | 1431 | -- | -- |
| 167.02 | 0.606 | 6.94 | 1.43 | 0.0103 | -- | 0.934 | -- | 0.659 | 22.3 | -- | -- | -- | -- |
| 169.93 | 0.61 | 6.94 | 1.39 | 0.107 | -- | -- | -- | 0.66 | 16.8 | -- | -- | -- | -- |
| 134.79 | 0.541 | 6.88 | 1.75 | -- | -0.928 | -- | -- | 0.926 | -- | 25.6 | 7464 | -- | -- |
| 205.99 | 0.668 | 6.95 | -- | 0.0951 | -0.587 | -- | -- | 0.62 | 17.7 | 28.1 | 7574 | -- | -- |
| 170.53 | 0.61 | 6.94 | 1.39 | -- | -- | -- | -- | 0.657 | -- | -- | -- | -- | -- |
| 221.13 | 0.696 | 6.98 | -- | 0.0821 | -- | -- | -- | 0.504 | 17.2 | -- | -- | -- | -- |
| 206.43 | 0.669 | 6.95 | -- | -- | -0.581 | -- | -- | 0.615 | -- | 28.1 | 7537 | -- | -- |
| 221.48 | 0.695 | 6.98 | -- | -- | -- | -- | -- | 0.503 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 2 | 117.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 48 | 119.00 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 252 | 121.43 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 265 | 121.68 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 275 | 121.90 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 287 | 122.20 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 288 | 122.25 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 291 | 122.30 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 292 | 122.30 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 293 | 122.33 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 306 | 122.51 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 316 | 122.69 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 11 |
| 333 | 122.95 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 336 | 122.99 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 344 | 123.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 350 | 123.10 | humidity | 90 | 43200 | < th | dose independent | sin | 13 | NA |
| 370 | 123.28 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 402 | 123.58 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 404 | 123.59 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 406 | 123.62 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 10 |
| 428 | 123.75 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 444 | 123.84 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 445 | 123.85 | wind | 7 | 43200 | < th | dose independent | sin | 22 | NA |
| 463 | 123.94 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 479 | 124.03 | wind | 7 | 43200 | > th | dose independent | sin | 22 | NA |
| 482 | 124.03 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 484 | 124.04 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 543 | 124.41 | humidity | 90 | 43200 | > th | dose independent | sin | 13 | NA |
| 693 | 125.18 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 711 | 125.25 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 18 |
| 765 | 125.51 | wind | 5 | 43200 | > th | dose dependent | sin | 22 | NA |
| 769 | 125.53 | humidity | 70 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 775 | 125.55 | humidity | 70 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 778 | 125.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 790 | 125.61 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 795 | 125.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 19 |
| 823 | 125.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 828 | 125.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 851 | 125.82 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 857 | 125.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 865 | 125.86 | humidity | 70 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 881 | 125.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 899 | 125.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 900 | 125.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 903 | 125.96 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 949 | 126.08 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 14 |