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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0946800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase C48, SUMO/Sentrin/Ubl1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0211) R2 : 0.00033
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0172 (0.0444) R2dN8 : 0.000426 R2N8 : 0.00033
σ : 0.397
deviance : 72.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.61 0.392 3.06 -0.0456 0.138 0.346 -0.362 -0.301 0.129 2.28 2.599 3838 -- --
69.56 0.388 3.06 -0.0643 0.137 0.386 -0.307 -- 0.134 1.87 2.2 3779 -- --
69.88 0.389 3.06 -0.0516 0.133 0.365 -- -0.192 0.132 2.52 2.1 3779 -- --
69.9 0.389 3.05 -0.0638 0.133 0.378 -- -- 0.136 2.95 2.14 3779 -- --
70.88 0.392 3.06 -0.0503 -- 0.355 -- -0.144 0.13 -- 2.082 3773 -- --
71.27 0.396 3.08 0.0143 0.127 -- -0.262 -- 0.0151 3.34 -- -- -- --
71.44 0.396 3.08 0.0192 0.132 -- -- -- 0.0164 4.16 -- -- -- --
70.9 0.392 3.06 -0.0581 -- 0.363 -- -- 0.132 -- 2.08 3773 -- --
70 0.39 3.06 -- 0.132 0.352 -- -- 0.134 3 2.1 3779 -- --
72.38 0.398 3.08 0.0246 -- -- -- -- 0.02 -- -- -- -- --
71.45 0.395 3.08 -- 0.132 -- -- -- 0.0143 4.16 -- -- -- --
70.97 0.392 3.06 -- -- 0.336 -- -- 0.131 -- 2.102 3773 -- --
72.4 0.397 3.08 -- -- -- -- -- 0.0172 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 63.49 atmosphere 1005.0 30 > th dose dependent rect. 2 1
2 63.54 temperature 20.0 30 > th dose dependent rect. 2 1
5 63.57 temperature 20.0 30 > th dose independent rect. 2 1
6 63.57 wind 3.0 30 < th dose dependent rect. 2 1
8 63.58 temperature 25.0 30 < th dose independent rect. 2 1
12 63.61 humidity 80.0 30 > th dose independent rect. 2 1
14 63.63 wind 3.0 30 < th dose independent rect. 2 1
15 63.63 wind 9.0 30 < th dose independent rect. 2 1
16 63.63 temperature 10.0 30 > th dose independent rect. 2 1
19 63.63 humidity 50.0 30 > th dose independent rect. 2 1
22 63.63 atmosphere 995.0 30 > th dose independent rect. 2 1
23 63.63 atmosphere 1005.0 30 > th dose independent rect. 2 1
24 63.63 atmosphere 1010.0 30 < th dose independent rect. 2 1
26 63.63 radiation 1.0 30 < th dose independent rect. 2 1
31 63.63 precipitation 0.1 30 < th dose independent rect. 2 1
32 63.63 temperature 10.0 30 > th dose independent rect. 3 23
33 63.63 humidity 50.0 30 > th dose dependent rect. 2 1
35 63.63 radiation 1.0 30 < th dose dependent rect. 2 1
40 63.63 precipitation 0.1 30 < th dose dependent rect. 2 1
48 63.85 atmosphere 1015.0 30 < th dose dependent rect. 2 1
49 63.92 temperature 30.0 30 < th dose dependent rect. 2 1
53 64.41 wind 1.0 30 > th dose independent rect. 2 1
61 64.58 wind 9.0 30 < th dose independent rect. 3 23
101 65.07 radiation 30.0 4320 > th dose independent rect. 16 1
131 65.10 wind 7.0 720 > th dose independent rect. 22 1
133 65.14 wind 7.0 90 > th dose independent rect. 22 1
134 65.14 radiation 10.0 1440 > th dose independent rect. 5 1
147 65.14 wind 7.0 90 > th dose dependent rect. 22 1
148 65.14 radiation 10.0 1440 > th dose dependent rect. 5 1
177 65.21 radiation 30.0 720 > th dose dependent rect. 16 1
195 65.36 wind 7.0 720 > th dose dependent rect. 22 1
210 67.15 humidity 60.0 720 > th dose independent rect. 19 8
211 67.18 radiation 10.0 30 < th dose dependent rect. 3 23
212 67.33 humidity 50.0 720 > th dose independent rect. 7 8
214 67.41 temperature 15.0 720 > th dose independent rect. 7 8
215 67.48 temperature 15.0 720 > th dose independent rect. 3 16
216 67.53 temperature 15.0 720 > th dose independent rect. 19 8
217 67.53 temperature 25.0 30 > th dose dependent rect. 6 1
219 67.58 temperature 15.0 720 > th dose independent rect. 15 16
221 67.64 atmosphere 995.0 30 > th dose independent rect. 3 23
222 67.67 wind 9.0 720 < th dose independent rect. 19 8
224 67.70 atmosphere 1015.0 720 < th dose independent rect. 3 16
225 67.72 wind 7.0 1440 < th dose independent rect. 22 2
227 67.79 atmosphere 1010.0 30 < th dose independent rect. 6 1
229 67.80 temperature 30.0 720 < th dose independent rect. 19 8
231 67.80 atmosphere 995.0 720 > th dose independent rect. 19 8
232 67.80 radiation 1.0 720 < th dose independent rect. 19 8
238 67.80 radiation 40.0 720 < th dose independent rect. 15 16
239 67.80 radiation 1.0 720 < th dose dependent rect. 19 8
245 67.82 wind 1.0 720 < th dose dependent rect. 12 1
247 67.89 atmosphere 1015.0 720 < th dose independent rect. 7 8
249 67.89 wind 3.0 30 > th dose dependent rect. 6 1
250 67.90 radiation 10.0 30 < th dose independent rect. 6 1
253 67.92 atmosphere 1010.0 30 < th dose dependent rect. 6 1
254 67.93 temperature 25.0 90 > th dose independent rect. 5 2
255 67.95 wind 9.0 720 < th dose independent rect. 7 8
256 67.96 wind 9.0 720 < th dose independent rect. 3 16
258 67.97 precipitation 0.1 720 < th dose independent rect. 19 8
259 67.97 precipitation 0.1 720 < th dose dependent rect. 19 8
267 68.13 temperature 25.0 90 > th dose independent rect. 1 6
275 68.35 humidity 50.0 720 > th dose independent rect. 17 16
276 68.36 wind 9.0 720 < th dose independent rect. 15 16
277 68.36 precipitation 0.1 30 < th dose independent rect. 3 23
278 68.36 precipitation 0.1 30 < th dose dependent rect. 3 23
279 68.39 radiation 30.0 1440 < th dose independent rect. 16 5
283 68.42 precipitation 0.1 720 < th dose independent rect. 7 8
284 68.42 precipitation 0.1 720 < th dose dependent rect. 7 8
285 68.44 radiation 30.0 1440 < th dose independent rect. 16 8
300 68.47 atmosphere 1015.0 1440 < th dose independent rect. 3 1
301 68.49 precipitation 0.1 720 < th dose independent rect. 3 16
317 68.49 precipitation 0.1 720 < th dose dependent rect. 3 16
318 68.53 temperature 15.0 1440 > th dose independent rect. 3 1
320 68.56 humidity 70.0 720 < th dose independent rect. 19 1
331 68.57 temperature 25.0 720 > th dose independent rect. 1 1
335 68.61 radiation 30.0 1440 < th dose independent rect. 16 11
339 68.66 radiation 30.0 1440 > th dose dependent rect. 7 1
354 68.67 radiation 40.0 30 < th dose independent rect. 11 16
356 68.68 wind 9.0 4320 > th dose dependent rect. 18 1
359 68.70 wind 9.0 1440 < th dose independent rect. 3 1
363 68.70 temperature 30.0 1440 < th dose independent rect. 3 1
367 68.70 humidity 50.0 1440 > th dose independent rect. 3 1
376 68.70 atmosphere 995.0 1440 > th dose independent rect. 3 1
377 68.70 radiation 1.0 1440 < th dose independent rect. 3 1
397 68.70 temperature 10.0 1440 > th dose independent rect. 4 23
400 68.70 radiation 1.0 1440 < th dose dependent rect. 3 1
415 68.71 wind 3.0 30 > th dose independent rect. 6 1
419 68.74 wind 1.0 30 < th dose independent rect. 24 3
421 68.74 precipitation 0.1 720 < th dose independent rect. 15 16
423 68.74 precipitation 0.1 720 < th dose dependent rect. 15 16
424 68.75 temperature 25.0 10 < th dose independent rect. 22 5
427 68.75 humidity 80.0 30 > th dose dependent rect. 23 4
432 68.78 humidity 70.0 30 > th dose dependent rect. 20 7
438 68.81 humidity 50.0 1440 < th dose independent rect. 16 2
470 68.81 humidity 60.0 1440 < th dose dependent rect. 18 1
481 68.81 wind 3.0 4320 < th dose dependent rect. 15 12
486 68.82 humidity 60.0 1440 > th dose independent rect. 18 2
487 68.82 humidity 50.0 1440 > th dose independent rect. 16 4
497 68.84 humidity 50.0 1440 < th dose dependent rect. 16 2
540 68.86 humidity 50.0 1440 > th dose independent rect. 16 8
544 68.86 humidity 60.0 1440 > th dose independent rect. 18 10
560 68.87 humidity 60.0 1440 > th dose independent rect. 18 14
582 68.88 wind 3.0 4320 < th dose independent rect. 16 11
585 68.88 temperature 10.0 30 > th dose dependent rect. 3 23
588 68.89 humidity 50.0 1440 > th dose independent rect. 16 11
593 68.90 radiation 40.0 30 < th dose independent rect. 11 13
594 68.90 humidity 50.0 1440 > th dose independent rect. 16 14
614 68.93 wind 9.0 30 < th dose dependent rect. 3 23
634 68.95 wind 3.0 4320 > th dose independent rect. 16 11
638 68.95 humidity 50.0 30 > th dose independent rect. 3 23
659 68.97 atmosphere 995.0 720 > th dose independent rect. 7 8
664 68.98 atmosphere 1015.0 30 < th dose independent rect. 3 23
665 68.98 wind 1.0 4320 < th dose dependent rect. 12 1
666 68.98 humidity 80.0 30 > th dose dependent rect. 23 1
671 68.99 atmosphere 1000.0 30 > th dose independent rect. 24 11
674 69.00 wind 3.0 4320 > th dose independent rect. 1 1
676 69.01 wind 3.0 4320 < th dose independent rect. 1 1
691 69.02 wind 3.0 4320 < th dose independent rect. 16 15
730 69.04 wind 3.0 4320 > th dose independent rect. 16 16
732 69.04 radiation 40.0 30 < th dose dependent rect. 11 16
741 69.06 temperature 15.0 720 > th dose independent rect. 3 8
742 69.06 wind 7.0 90 < th dose independent rect. 3 16
765 69.07 atmosphere 1015.0 30 < th dose independent rect. 11 13
829 69.09 radiation 30.0 10 < th dose independent rect. 24 11
839 69.10 humidity 90.0 30 < th dose dependent rect. 6 1
840 69.10 radiation 40.0 10 < th dose dependent rect. 24 11
841 69.11 wind 9.0 4320 > th dose independent rect. 18 1
850 69.12 atmosphere 1015.0 720 < th dose independent rect. 3 8
852 69.13 wind 9.0 4320 < th dose independent rect. 18 2
855 69.13 humidity 80.0 4320 < th dose dependent rect. 1 1
859 69.14 humidity 50.0 720 > th dose independent rect. 23 16
861 69.15 wind 3.0 4320 < th dose independent sin 13 NA
863 69.15 atmosphere 1000.0 30 > th dose independent rect. 3 8
871 69.15 radiation 40.0 10 < th dose dependent rect. 3 8
877 69.16 wind 9.0 720 < th dose independent rect. 3 8
922 69.18 humidity 90.0 720 < th dose independent rect. 1 1
928 69.18 wind 3.0 4320 < th dose dependent sin 15 NA
937 69.19 wind 7.0 10 < th dose dependent rect. 20 7
939 69.20 wind 3.0 4320 > th dose independent sin 13 NA
940 69.20 temperature 25.0 270 < th dose independent rect. 24 7
942 69.20 atmosphere 995.0 720 > th dose independent rect. 3 8
947 69.20 temperature 10.0 720 > th dose independent rect. 11 16
950 69.20 radiation 10.0 30 < th dose independent rect. 3 23
957 69.21 wind 9.0 720 < th dose independent rect. 13 16
959 69.21 temperature 15.0 720 > th dose independent rect. 23 16
962 69.21 wind 3.0 4320 < th dose dependent rect. 18 1
983 69.22 temperature 15.0 720 > th dose independent rect. 5 8