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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0946600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glucan endo-1,3-beta-glucosidase GV (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase GV) ((1->3)-beta-glucanase isoenzyme GV) (Beta-1,3- endoglucanase GV).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.59 (0.101) R2 : 0.606
β1 : -8.08 (0.516) R2dD : 0.814 R2D : -0.827
β2 : 1.34 (0.19) R2dC : 0.0436 R2C : -0.09
β3 : -5.14 (0.23) R2dE : 0.611 R2E : 0.172
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 14 (1.23) R2dD*E : 0.429 R2D*E : -0.192
γ1 : -1.68 (0.211) R2dN8 : 0.133 R2N8 : -0.291
σ : 1.37
deviance : 864.83
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C
peak time of C : 4.78
E
wheather : temperature
threshold : 25
memory length : 4311
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.09
open length of G : 5.85

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
863.45 1.38 6.59 -8.11 1.33 -5.16 0.817 14.2 -1.68 4.63 24.96 4310 7 5.92
1000.34 1.47 6.24 -7.53 1.8 -7.17 0.651 -- -1.68 5.97 22.5 25561 7.62 8.8
864.83 1.37 6.59 -8.08 1.34 -5.14 -- 14 -1.68 4.78 25 4311 7.09 5.85
892.51 1.39 6.16 -7.93 1.41 -8.1 -- -- -1.62 4.63 22.7 25812 10.7 6.69
948.28 1.43 6.65 -7.7 -- -5.23 -- 13.9 -1.82 -- 25 5404 6.8 6.12
1957.51 2.07 5.5 -0.274 1.44 -- 1.22 -- 1.15 4.19 -- -- -- --
1961.35 2.07 5.5 -0.285 1.46 -- -- -- 1.15 4.39 -- -- -- --
970.98 1.45 6.23 -8.06 -- -8.51 -- -- -1.97 -- 22.6 26459 12.4 5.2
1272.46 1.66 5.6 -- 1.46 -4.65 -- -- -0.0395 5.37 24.98 5498 12 6.63
2075.67 2.13 5.51 -0.228 -- -- -- -- 1.19 -- -- -- -- --
1963.49 2.07 5.5 -- 1.45 -- -- -- 1.18 4.39 -- -- -- --
1287.45 1.67 5.84 -- -- -4.76 -- -- 0.00839 -- 24.81 4851 13.9 5.42
2077.04 2.13 5.51 -- -- -- -- -- 1.21 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 850.36 radiation 1 43200 > th dose independent rect. 18 1
11 859.84 humidity 90 43200 > th dose independent rect. 22 1
12 864.57 temperature 25 4320 < th dose independent rect. 7 6
13 865.35 temperature 25 4320 > th dose independent rect. 7 6
14 867.76 temperature 25 4320 > th dose independent rect. 10 2
19 874.05 temperature 25 4320 < th dose independent rect. 10 2
20 874.13 radiation 1 43200 < th dose dependent rect. 18 1
23 874.34 radiation 1 43200 < th dose dependent rect. 18 5
29 874.77 radiation 1 43200 < th dose dependent rect. 18 10
44 880.69 radiation 1 14400 < th dose dependent rect. 2 3
48 883.80 radiation 1 43200 < th dose independent rect. 18 10
52 884.13 radiation 1 43200 < th dose independent rect. 18 7
54 884.71 radiation 1 43200 < th dose independent rect. 18 1
74 896.16 radiation 20 43200 < th dose independent rect. 6 3
75 896.20 radiation 20 43200 < th dose independent rect. 4 5
81 896.39 radiation 20 43200 < th dose independent rect. 18 15
101 901.54 humidity 90 43200 > th dose independent rect. 17 7
135 909.13 humidity 90 43200 > th dose dependent rect. 22 1
152 910.75 humidity 90 43200 < th dose independent rect. 18 1
154 910.91 temperature 25 4320 > th dose independent rect. 6 12
160 913.31 radiation 1 43200 < th dose dependent rect. 21 8
166 914.19 temperature 25 4320 < th dose independent rect. 6 12
180 916.45 humidity 90 43200 > th dose dependent rect. 4 22
187 917.32 temperature 25 4320 > th dose independent sin 2 NA
192 917.70 humidity 90 43200 > th dose independent rect. 9 16
207 919.71 humidity 80 43200 < th dose independent rect. 11 4
210 919.77 humidity 80 43200 > th dose independent rect. 12 1
214 920.13 humidity 80 43200 > th dose independent rect. 10 5
218 920.29 humidity 80 43200 < th dose independent rect. 12 1
228 922.12 humidity 90 43200 < th dose independent rect. 17 6
248 923.82 temperature 25 4320 < th dose independent sin 1 NA
249 923.90 radiation 1 43200 < th dose dependent rect. 18 20
311 925.90 temperature 20 14400 > th dose independent rect. 22 1
314 926.21 humidity 90 43200 > th dose dependent rect. 15 22
320 926.34 humidity 90 43200 > th dose dependent sin 3 NA
321 926.38 humidity 90 43200 < th dose independent rect. 22 1
341 927.30 radiation 1 43200 < th dose dependent sin 12 NA
349 927.61 humidity 90 43200 > th dose independent rect. 3 22
357 927.80 humidity 90 43200 > th dose dependent no NA NA
359 927.86 humidity 90 43200 > th dose dependent rect. 21 23
378 928.33 humidity 90 43200 > th dose dependent rect. 19 23
383 928.46 humidity 90 43200 > th dose independent sin 18 NA
386 928.50 temperature 20 14400 < th dose independent rect. 22 1
400 928.72 humidity 90 43200 > th dose dependent rect. 2 17
454 930.82 humidity 90 43200 > th dose dependent rect. 10 23
473 931.59 radiation 20 43200 < th dose independent sin 10 NA
474 931.64 humidity 90 43200 > th dose dependent rect. 19 5
484 931.88 humidity 90 43200 < th dose independent rect. 9 16
518 932.91 humidity 90 43200 > th dose dependent rect. 4 6
521 933.00 temperature 20 14400 > th dose independent rect. 22 3
546 934.00 humidity 90 43200 > th dose dependent rect. 16 9
549 934.11 temperature 20 14400 < th dose independent rect. 21 4
569 935.01 humidity 90 43200 > th dose dependent rect. 3 9
578 935.33 temperature 20 43200 < th dose independent rect. 5 1
583 935.41 temperature 25 4320 > th dose dependent rect. 11 3
588 935.67 radiation 40 43200 < th dose independent rect. 10 1
594 935.93 radiation 1 43200 < th dose dependent rect. 12 20
608 936.20 humidity 90 43200 > th dose dependent rect. 5 2
649 937.36 temperature 20 43200 > th dose independent rect. 5 2
667 937.85 humidity 80 43200 > th dose dependent rect. 10 1
677 938.15 humidity 90 43200 > th dose dependent sin 17 NA
738 939.90 humidity 90 43200 < th dose independent sin 18 NA
752 940.26 temperature 20 4320 > th dose dependent rect. 4 6
762 940.51 temperature 20 1440 > th dose dependent rect. 17 16
802 941.90 humidity 90 43200 > th dose independent rect. 15 22
816 942.35 radiation 1 43200 < th dose dependent rect. 2 17
819 942.37 radiation 1 43200 < th dose dependent rect. 4 15
823 942.38 radiation 1 43200 < th dose dependent rect. 2 21
861 942.47 radiation 1 43200 < th dose dependent no NA NA
875 942.57 radiation 1 43200 < th dose dependent rect. 2 12
883 942.67 radiation 1 43200 < th dose dependent rect. 21 17
903 943.11 humidity 90 43200 < th dose independent rect. 9 2
913 943.45 wind 3 43200 > th dose dependent rect. 10 5
934 943.75 radiation 1 43200 < th dose independent rect. 9 2
986 944.48 radiation 1 43200 > th dose independent rect. 9 2