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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0946500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glucan endo-1,3-beta-glucosidase GV (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase GV) ((1->3)-beta-glucanase isoenzyme GV) (Beta-1,3- endoglucanase GV).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.42 (0.103) R2 : 0.619
β1 : -8.52 (0.457) R2dD : 0.794 R2D : -0.509
β2 : 1.38 (0.199) R2dC : 0.0402 R2C : -0.0289
β3 : 4.92 (0.251) R2dE : 0.507 R2E : 0.124
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.3 (1.09) R2dD*E : 0.237 R2D*E : -0.018
γ1 : -0.91 (0.203) R2dN8 : 0.0347 R2N8 : -0.152
σ : 1.44
deviance : 957.3
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C
peak time of C : 4.74
E
wheather : temperature
threshold : 25
memory length : 4230
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.98
open length of G : 1.92

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
942.37 1.44 7.42 -8.53 1.33 4.86 2.48 -10.5 -0.907 4.17 25 4242 10 1.88
1219.9 1.63 7.07 -6.86 1.15 5.28 1.27 -- -0.411 4.51 24.41 5698 9.67 2.04
957.3 1.44 7.42 -8.52 1.38 4.92 -- -10.3 -0.91 4.74 25 4230 9.98 1.92
1104.18 1.55 7.13 -6.08 1.14 6.21 -- -- -0.97 5.07 24.72 5654 10.5 2.21
1057.08 1.51 7.43 -8.53 -- 4.96 -- -10.2 -0.89 -- 25.01 4244 10 1.87
2106.96 2.15 6.46 -1.42 1.42 -- 2.91 -- 1.45 3.46 -- -- -- --
2132.04 2.16 6.47 -1.48 1.46 -- -- -- 1.43 3.85 -- -- -- --
1182.73 1.6 7.11 -6.14 -- 6.33 -- -- -0.889 -- 24.8 5654 10.5 2.23
1524.24 1.82 6.53 -- 0.938 3.64 -- -- 1.18 5.24 25.1 5315 13.5 4.92
2248.65 2.22 6.47 -1.42 -- -- -- -- 1.47 -- -- -- -- --
2189.42 2.19 6.43 -- 1.43 -- -- -- 1.59 3.87 -- -- -- --
1469.14 1.79 6.67 -- -- 4.3 -- -- 0.543 -- 24.6 5234 15.3 4.44
2301.49 2.24 6.44 -- -- -- -- -- 1.63 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 893.70 radiation 1 43200 > th dose independent rect. 18 1
12 929.43 radiation 1 43200 < th dose independent rect. 18 9
14 929.59 radiation 1 43200 < th dose independent rect. 18 7
15 929.62 radiation 1 43200 < th dose dependent rect. 18 1
16 929.62 radiation 1 43200 < th dose dependent rect. 18 7
18 929.76 radiation 1 43200 < th dose dependent rect. 18 9
21 929.81 radiation 1 43200 < th dose dependent rect. 18 5
26 930.38 radiation 1 43200 < th dose independent rect. 18 1
32 931.02 radiation 1 14400 < th dose dependent rect. 1 4
35 936.76 humidity 90 43200 > th dose independent rect. 22 1
45 954.93 radiation 1 14400 < th dose dependent rect. 22 7
49 960.11 humidity 80 43200 > th dose dependent rect. 10 1
66 964.44 humidity 90 43200 < th dose independent rect. 9 1
68 967.16 atmosphere 1005 43200 > th dose independent rect. 18 1
72 969.00 temperature 25 4320 > th dose independent rect. 10 2
73 969.13 humidity 80 43200 > th dose independent rect. 10 5
74 969.15 humidity 90 43200 > th dose independent rect. 9 1
75 969.31 temperature 25 4320 < th dose independent rect. 7 6
76 969.32 temperature 25 4320 > th dose independent rect. 8 5
78 970.19 humidity 90 43200 > th dose independent rect. 8 17
91 971.05 wind 9 43200 < th dose dependent rect. 11 1
93 971.26 temperature 25 4320 < th dose independent rect. 10 2
98 973.25 humidity 80 43200 < th dose independent rect. 10 5
99 973.25 humidity 90 43200 > th dose independent rect. 5 20
100 973.32 humidity 80 43200 > th dose independent rect. 12 1
101 973.52 humidity 90 43200 > th dose independent rect. 17 6
102 974.10 humidity 80 43200 < th dose independent rect. 12 1
106 974.66 atmosphere 1005 43200 > th dose independent rect. 16 1
108 975.56 atmosphere 1005 43200 < th dose independent rect. 18 1
109 975.57 radiation 1 43200 < th dose dependent rect. 18 20
111 975.74 humidity 80 43200 < th dose independent rect. 11 3
113 975.75 humidity 90 43200 > th dose dependent rect. 4 21
116 975.97 humidity 90 43200 > th dose independent rect. 16 8
117 976.00 humidity 90 43200 < th dose independent rect. 18 2
121 976.24 wind 1 43200 > th dose dependent rect. 11 1
131 977.21 humidity 90 43200 > th dose dependent rect. 3 15
136 977.59 atmosphere 1005 43200 > th dose independent rect. 15 4
139 977.75 humidity 90 43200 > th dose dependent sin 2 NA
163 978.79 radiation 1 43200 < th dose dependent sin 12 NA
174 979.52 humidity 90 43200 > th dose dependent rect. 4 7
186 980.30 humidity 90 43200 > th dose dependent rect. 5 4
237 982.71 humidity 90 43200 < th dose independent rect. 8 17
258 983.86 humidity 90 43200 > th dose dependent rect. 3 11
260 984.11 wind 3 43200 > th dose dependent rect. 9 6
287 985.04 atmosphere 1005 43200 < th dose independent rect. 16 3
297 985.56 wind 3 43200 > th dose dependent rect. 11 3
331 987.50 humidity 90 43200 < th dose independent rect. 17 6
337 987.70 radiation 1 43200 < th dose dependent rect. 13 19
392 989.76 humidity 90 43200 > th dose independent sin 19 NA
421 990.89 radiation 20 43200 < th dose independent rect. 8 1
440 991.90 radiation 1 43200 < th dose dependent rect. 24 14
443 991.90 radiation 1 43200 < th dose dependent rect. 2 17
446 991.91 radiation 1 43200 < th dose dependent rect. 4 15
448 991.91 radiation 1 43200 < th dose dependent rect. 24 19
450 991.91 radiation 1 43200 < th dose dependent rect. 21 22
451 991.91 radiation 1 43200 < th dose dependent rect. 2 23
452 991.92 radiation 1 43200 < th dose dependent rect. 4 21
456 991.93 radiation 1 43200 < th dose dependent rect. 2 12
462 991.93 radiation 1 43200 < th dose dependent rect. 24 22
464 991.94 radiation 1 43200 < th dose dependent no NA NA
484 991.95 radiation 1 43200 < th dose dependent rect. 4 10
566 994.18 radiation 20 43200 < th dose independent rect. 6 3
569 994.24 radiation 20 43200 < th dose independent rect. 3 6
571 994.26 radiation 20 43200 < th dose independent rect. 1 8
579 994.42 radiation 20 43200 < th dose independent rect. 18 15
608 995.09 humidity 90 43200 < th dose independent sin 19 NA
661 996.76 radiation 1 43200 > th dose independent rect. 18 20
675 996.94 radiation 1 43200 > th dose independent rect. 18 15
681 997.22 temperature 20 43200 > th dose independent rect. 6 1
719 998.36 temperature 20 43200 < th dose independent rect. 6 1
722 998.52 radiation 1 43200 < th dose independent rect. 18 20
736 998.75 radiation 1 43200 < th dose dependent rect. 13 6
737 998.75 radiation 1 43200 < th dose dependent rect. 13 12
741 998.81 radiation 1 43200 < th dose dependent rect. 13 9
749 999.06 temperature 20 14400 > th dose independent rect. 22 1
761 999.30 wind 5 43200 < th dose independent rect. 9 7
785 999.85 radiation 1 43200 < th dose independent rect. 18 15
799 1000.09 humidity 90 43200 < th dose independent rect. 22 1
802 1000.25 wind 5 43200 > th dose independent rect. 9 7
814 1000.46 humidity 90 43200 > th dose dependent rect. 15 23
824 1000.79 radiation 1 43200 > th dose independent rect. 9 1
827 1000.85 radiation 1 43200 < th dose independent rect. 9 1
830 1001.10 temperature 20 14400 < th dose independent rect. 22 1
871 1002.06 humidity 90 43200 > th dose dependent no NA NA
883 1002.48 wind 5 43200 < th dose independent rect. 10 5
894 1002.76 humidity 90 43200 > th dose dependent rect. 21 23
911 1003.37 humidity 90 43200 > th dose dependent rect. 19 23
963 1005.13 humidity 90 43200 > th dose dependent rect. 22 1
981 1005.82 radiation 1 43200 > th dose independent rect. 5 9
984 1005.93 radiation 1 43200 < th dose independent rect. 5 9
1000 1006.16 radiation 1 43200 < th dose independent rect. 7 7