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Os01g0944900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-1,3-glucanase precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.67 (0.0443) R2 : 0.683
β1 : 2.53 (0.17) R2dD : 0.23 R2D : 0.0594
β2 : 2.45 (0.0938) R2dC : 0.479 R2C : 0.399
β3 : 4.09 (0.346) R2dE : 0.254 R2E : -0.404
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 11.9 (0.96) R2dD*E : 0.252 R2D*E : 0.0371
γ1 : 0.723 (0.0887) R2dN8 : 0.067 R2N8 : -0.00812
σ : 0.729
deviance : 244.78
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_____
C
peak time of C : 12.9
E
wheather : radiation
threshold : 41.93
memory length : 4085
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13.8
open length of G : 19.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
243.49 0.733 7.67 2.59 2.44 3.91 -0.712 11.4 0.684 12.9 41.35 4085 13.8 19.2
302.48 0.81 7.49 1.92 2.32 2.09 -0.15 -- 0.861 12.8 41.94 2903 13.9 21.3
244.78 0.729 7.67 2.53 2.45 4.09 -- 11.9 0.723 12.9 41.93 4085 13.8 19.2
302.32 0.81 7.48 1.92 2.33 2.12 -- -- 0.865 12.8 41.91 2890 13.8 21.4
576.01 1.12 7.8 2.65 -- 4.13 -- 12.9 0.634 -- 43.81 7483 13.8 19.3
343.59 0.869 7.46 1.93 2.27 -- -1.01 -- 0.69 12.9 -- -- -- --
347.89 0.873 7.47 1.89 2.27 -- -- -- 0.684 12.9 -- -- -- --
449.67 0.988 7.5 1.82 -- 2.38 -- -- 0.741 -- -1.095 224 14.5 23.4
391.78 0.922 7.49 -- 2.33 1.87 -- -- 0.54 12.5 41.44 2844 14.8 21.8
670.76 1.21 7.51 1.81 -- -- -- -- 0.642 -- -- -- -- --
442.09 0.984 7.51 -- 2.24 -- -- -- 0.474 12.8 -- -- -- --
526.97 1.07 7.56 -- -- 3.04 -- -- 0.0374 -- -5.001 122 3.92 18.6
756.87 1.28 7.55 -- -- -- -- -- 0.442 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 257.61 radiation 40.0 1440 < th dose independent rect. 19 14
2 257.62 radiation 40.0 1440 < th dose independent rect. 17 16
3 257.83 wind 9.0 43200 > th dose independent rect. 18 1
4 257.91 radiation 40.0 1440 < th dose independent rect. 3 6
6 258.38 humidity 80.0 43200 > th dose independent rect. 13 1
7 258.43 radiation 40.0 1440 < th dose independent rect. 5 4
8 258.53 temperature 25.0 14400 > th dose dependent rect. 24 3
11 259.16 atmosphere 1005.0 14400 < th dose independent rect. 16 1
12 259.18 atmosphere 1005.0 14400 > th dose independent rect. 16 1
14 259.52 humidity 80.0 43200 > th dose dependent rect. 14 1
15 259.54 radiation 40.0 1440 < th dose independent rect. 1 8
18 259.75 humidity 80.0 43200 > th dose dependent rect. 13 4
21 259.83 humidity 80.0 43200 > th dose independent rect. 13 3
25 260.00 wind 9.0 43200 > th dose dependent rect. 18 1
27 260.13 radiation 40.0 1440 > th dose independent rect. 8 1
48 260.36 wind 9.0 43200 < th dose independent rect. 18 1
51 260.71 humidity 80.0 43200 > th dose independent rect. 15 1
53 260.74 radiation 40.0 1440 < th dose independent rect. 8 1
54 260.77 temperature 25.0 14400 > th dose independent rect. 2 1
57 260.82 radiation 40.0 4320 > th dose dependent rect. 14 19
60 261.03 precipitation 0.1 43200 > th dose dependent rect. 13 1
63 261.58 wind 3.0 14400 > th dose dependent rect. 18 1
64 261.65 atmosphere 1005.0 14400 < th dose independent rect. 14 4
65 261.67 radiation 40.0 1440 < th dose independent rect. 22 11
69 261.88 temperature 25.0 14400 < th dose independent rect. 3 1
75 262.31 wind 3.0 43200 < th dose dependent rect. 3 2
80 262.41 wind 5.0 14400 < th dose independent rect. 18 1
87 262.80 wind 5.0 14400 > th dose independent rect. 18 1
95 263.28 humidity 80.0 43200 < th dose independent rect. 13 1
111 263.79 radiation 40.0 4320 > th dose dependent rect. 14 1
133 264.06 precipitation 0.1 43200 < th dose independent rect. 13 1
134 264.06 precipitation 0.1 43200 < th dose dependent rect. 13 1
141 264.47 precipitation 0.1 43200 > th dose independent rect. 13 1
142 264.49 precipitation 0.1 43200 > th dose dependent rect. 18 2
147 264.62 precipitation 0.1 43200 > th dose dependent rect. 13 4
177 265.92 precipitation 0.1 43200 < th dose independent rect. 13 4
178 265.92 precipitation 0.1 43200 < th dose dependent rect. 13 4
190 266.10 precipitation 0.1 43200 > th dose independent rect. 13 4
202 266.53 precipitation 0.1 43200 > th dose independent rect. 19 1
205 266.60 temperature 25.0 14400 < th dose independent rect. 5 1
210 266.77 precipitation 0.1 43200 < th dose independent rect. 19 1
211 266.77 precipitation 0.1 43200 < th dose dependent rect. 19 1
212 266.79 wind 1.0 43200 > th dose dependent rect. 3 1
213 266.80 precipitation 0.1 43200 < th dose independent rect. 15 2
214 266.80 precipitation 0.1 43200 < th dose dependent rect. 15 2
219 266.96 precipitation 0.1 43200 > th dose independent rect. 15 2
221 266.97 precipitation 0.1 43200 > th dose dependent rect. 15 2
272 268.06 wind 9.0 14400 < th dose dependent rect. 18 1
312 268.87 precipitation 0.1 43200 > th dose dependent rect. 3 14
376 269.87 temperature 30.0 14400 < th dose independent rect. 12 1
388 270.04 precipitation 0.1 43200 > th dose dependent rect. 5 1
400 270.20 temperature 25.0 14400 > th dose independent rect. 5 1
402 270.21 temperature 30.0 14400 > th dose independent rect. 12 1
404 270.26 humidity 90.0 14400 < th dose independent rect. 6 1
430 270.68 humidity 80.0 43200 > th dose dependent rect. 9 2
437 270.82 precipitation 0.1 43200 > th dose independent rect. 5 1
480 271.31 precipitation 0.1 43200 > th dose dependent rect. 3 11
497 271.64 precipitation 0.1 43200 < th dose independent rect. 5 1
498 271.64 precipitation 0.1 43200 < th dose dependent rect. 5 1
506 271.79 radiation 10.0 43200 > th dose independent rect. 5 1
528 272.02 humidity 90.0 14400 > th dose independent rect. 6 1
549 272.31 radiation 40.0 4320 > th dose dependent rect. 7 3
566 272.34 precipitation 0.1 43200 > th dose independent rect. 3 14
573 272.38 precipitation 0.1 43200 < th dose independent rect. 3 14
574 272.38 precipitation 0.1 43200 < th dose dependent rect. 3 14
588 272.58 humidity 90.0 14400 > th dose independent rect. 1 7
613 272.91 radiation 40.0 4320 > th dose dependent sin 12 NA
629 273.03 precipitation 0.1 43200 > th dose independent rect. 3 17
632 273.06 humidity 90.0 14400 > th dose dependent rect. 1 2
633 273.09 precipitation 0.1 43200 < th dose independent rect. 3 17
634 273.09 precipitation 0.1 43200 < th dose dependent rect. 3 17
653 273.35 humidity 90.0 43200 > th dose independent rect. 13 8
662 273.41 humidity 80.0 43200 > th dose independent rect. 10 1
668 273.46 precipitation 0.1 43200 > th dose dependent rect. 23 18
673 273.53 precipitation 0.1 43200 > th dose dependent rect. 3 8
674 273.54 radiation 10.0 14400 > th dose independent rect. 11 1
682 273.63 humidity 90.0 14400 > th dose independent rect. 3 4
698 273.84 humidity 90.0 14400 > th dose independent rect. 1 3
711 273.90 temperature 30.0 43200 < th dose dependent rect. 13 1
720 274.01 temperature 25.0 43200 < th dose independent rect. 16 1
730 274.05 wind 3.0 14400 > th dose independent rect. 14 1
742 274.16 humidity 80.0 43200 < th dose independent rect. 10 1
766 274.34 wind 1.0 43200 > th dose independent rect. 3 2
769 274.35 radiation 10.0 14400 < th dose independent rect. 11 1
801 274.57 radiation 10.0 14400 > th dose independent rect. 11 3
807 274.59 temperature 25.0 43200 > th dose independent rect. 8 9
816 274.64 temperature 25.0 43200 < th dose independent rect. 8 9
832 274.69 humidity 90.0 43200 < th dose independent rect. 13 7
846 274.79 wind 3.0 43200 < th dose independent rect. 3 1
849 274.79 precipitation 0.1 43200 > th dose independent rect. 3 11
850 274.79 humidity 90.0 43200 > th dose independent rect. 9 12
877 274.93 humidity 90.0 43200 > th dose dependent rect. 20 1
878 274.94 wind 3.0 14400 < th dose independent rect. 14 1
880 274.95 precipitation 0.1 43200 < th dose independent rect. 3 11
881 274.95 precipitation 0.1 43200 < th dose dependent rect. 3 11
891 275.01 humidity 90.0 43200 > th dose dependent rect. 7 14
896 275.03 radiation 10.0 14400 < th dose dependent rect. 13 2
904 275.06 temperature 25.0 43200 < th dose dependent rect. 8 1
905 275.07 precipitation 0.1 43200 < th dose independent rect. 13 7
907 275.07 precipitation 0.1 43200 < th dose dependent rect. 13 7
909 275.08 precipitation 0.1 43200 > th dose independent rect. 3 8
919 275.11 wind 1.0 43200 > th dose independent rect. 23 6
927 275.12 precipitation 0.1 43200 > th dose independent rect. 13 7
955 275.17 precipitation 0.1 43200 < th dose independent rect. 3 8
957 275.17 precipitation 0.1 43200 < th dose dependent rect. 3 8
980 275.26 precipitation 0.1 43200 < th dose independent rect. 23 21
982 275.26 precipitation 0.1 43200 < th dose dependent rect. 23 21
998 275.32 precipitation 0.1 43200 > th dose independent rect. 23 21