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Os01g0944500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-1,3-glucanase precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0729) R2 : 0.445
β1 : -0.251 (0.263) R2dD : 0.00132 R2D : -0.0733
β2 : 0.586 (0.159) R2dC : 0.017 R2C : -0.0816
β3 : 7.62 (0.482) R2dE : 1.02 R2E : -0.344
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 20.4 (1.44) R2dD*E : 0.787 R2D*E : -0.629
γ1 : -0.0615 (0.136) R2dN8 : 0.000754 R2N8 : -0.0947
σ : 1.15
deviance : 604.74
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_____
C
peak time of C : 5.24
E
wheather : radiation
threshold : 41.33
memory length : 7212
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14
open length of G : 18.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
611.8 1.16 10.3 -0.226 0.484 7.65 1.92 20.5 -0.0374 7.14 41.2 7225 14.1 18.5
952.26 1.45 9.78 -2.01 0.635 -1.03 1.38 -- 0.104 6.39 39.55 12 14.8 19
604.74 1.15 10.3 -0.251 0.586 7.62 -- 20.4 -0.0615 5.24 41.33 7212 14 18.8
953.6 1.44 9.79 -2.02 0.657 -1.15 -- -- 0.104 5.36 37.1 25 14.4 18.7
623.09 1.16 10.3 -0.175 -- 7.75 -- 20.6 -0.076 -- 41.33 7220 14 18.8
953.27 1.45 9.78 -1.99 0.619 -- 1.52 -- 0.109 6.49 -- -- -- --
956.23 1.45 9.79 -1.98 0.665 -- -- -- 0.101 5.26 -- -- -- --
974.29 1.46 9.79 -1.97 -- 1.01 -- -- 0.137 -- 39.91 5977 13.9 20
1058.99 1.52 9.73 -- 0.619 -0.441 -- -- 0.339 5.44 33.28 12 14.6 19
979.35 1.46 9.79 -1.96 -- -- -- -- 0.118 -- -- -- -- --
1059.57 1.52 9.74 -- 0.632 -- -- -- 0.322 5.38 -- -- -- --
826.8 1.34 9.75 -- -- 3.14 -- -- 0.167 -- 30.01 24439 14.1 18.3
1080.38 1.53 9.75 -- -- -- -- -- 0.335 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 619.35 wind 7.0 14400 > th dose independent rect. 15 4
2 620.61 wind 7.0 14400 < th dose independent rect. 15 4
5 623.17 wind 7.0 14400 < th dose independent rect. 14 6
9 628.76 wind 7.0 43200 > th dose dependent rect. 18 1
11 629.32 radiation 10.0 14400 > th dose independent rect. 11 3
12 629.69 wind 5.0 14400 > th dose dependent rect. 16 3
14 630.72 radiation 10.0 14400 < th dose independent rect. 11 1
15 630.91 radiation 10.0 43200 < th dose independent rect. 14 1
18 632.65 wind 9.0 43200 < th dose independent rect. 18 1
22 633.38 radiation 10.0 14400 < th dose independent rect. 10 4
40 642.04 wind 9.0 43200 > th dose independent rect. 18 1
49 645.10 humidity 70.0 43200 > th dose independent rect. 15 2
52 645.71 wind 7.0 14400 < th dose independent rect. 16 1
53 646.02 humidity 70.0 43200 > th dose independent rect. 12 5
67 647.82 radiation 10.0 43200 < th dose dependent rect. 13 1
69 648.01 radiation 20.0 14400 < th dose dependent rect. 11 3
71 648.22 humidity 70.0 43200 < th dose independent rect. 15 1
74 648.57 humidity 70.0 43200 > th dose independent rect. 12 2
88 650.01 wind 7.0 14400 > th dose independent rect. 16 1
99 651.05 radiation 20.0 14400 < th dose dependent rect. 11 1
116 652.66 wind 7.0 14400 > th dose independent rect. 14 17
119 652.98 humidity 80.0 43200 < th dose dependent rect. 10 5
129 653.93 radiation 40.0 14400 > th dose dependent rect. 10 1
137 654.71 humidity 70.0 43200 < th dose independent rect. 10 20
145 655.06 atmosphere 1010.0 14400 < th dose independent rect. 5 1
146 655.08 humidity 70.0 43200 < th dose independent rect. 15 23
155 655.23 precipitation 0.1 43200 < th dose independent rect. 17 1
156 655.23 precipitation 0.1 43200 < th dose dependent rect. 17 1
161 655.39 humidity 70.0 43200 < th dose independent rect. 19 23
163 655.42 humidity 90.0 43200 < th dose dependent rect. 13 1
166 655.65 precipitation 0.1 43200 > th dose independent rect. 17 1
173 655.91 wind 7.0 14400 < th dose independent rect. 14 17
199 656.41 humidity 70.0 43200 < th dose independent no NA NA
207 656.59 humidity 70.0 43200 < th dose independent rect. 4 23
242 656.90 precipitation 0.1 43200 > th dose dependent rect. 17 1
250 656.99 atmosphere 1010.0 14400 > th dose independent rect. 5 1
256 657.04 radiation 10.0 14400 > th dose dependent rect. 6 1
267 657.18 humidity 70.0 43200 > th dose independent rect. 15 22
309 657.57 humidity 70.0 43200 > th dose independent rect. 19 22
321 657.74 wind 1.0 43200 < th dose dependent rect. 2 3
333 657.98 wind 3.0 14400 > th dose dependent rect. 14 17
347 658.16 humidity 70.0 43200 < th dose independent sin 18 NA
389 658.88 humidity 70.0 43200 > th dose independent rect. 10 20
390 658.89 precipitation 0.1 43200 > th dose dependent rect. 1 3
479 660.02 humidity 70.0 43200 > th dose independent no NA NA
491 660.20 humidity 70.0 43200 > th dose independent rect. 4 23
504 660.34 humidity 70.0 43200 > th dose independent rect. 23 23
605 661.17 wind 7.0 14400 > th dose dependent rect. 14 17
629 661.47 humidity 90.0 43200 < th dose dependent rect. 10 1
635 661.52 humidity 80.0 43200 < th dose dependent rect. 10 14
702 662.04 radiation 10.0 14400 < th dose independent rect. 18 20
716 662.16 humidity 70.0 43200 < th dose independent rect. 10 2
731 662.33 precipitation 0.1 43200 > th dose dependent rect. 23 5
738 662.37 radiation 10.0 14400 < th dose independent rect. 3 11
748 662.44 humidity 70.0 43200 > th dose independent sin 21 NA
759 662.51 humidity 80.0 43200 < th dose dependent sin 23 NA
809 663.03 humidity 50.0 43200 > th dose dependent rect. 10 7
822 663.13 humidity 60.0 43200 > th dose dependent rect. 13 1