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Os01g0944000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.81 (0.0189) R2 : 0.582
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.2 (0.0476) R2dC : 0.582 R2C : 0.581
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0234 (0.0399) R2dN8 : 0.000408 R2N8 : -0.000498
σ : 0.357
deviance : 58.35
__
_____
C
peak time of C : 3.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.86 0.328 8.81 0.3 0.6 1.48 -0.869 -0.831 0.0655 21.8 0.3301 659 -- --
49.75 0.329 8.83 0.27 0.572 1.3 -0.839 -- 0.0405 22.8 0.3012 658 -- --
51.66 0.335 8.81 0.328 0.589 1.48 -- -0.662 0.0651 21.7 0.31 651 -- --
52.41 0.337 8.81 0.31 0.637 1.53 -- -- 0.0708 21.6 0.34 664 -- --
62.12 0.367 8.81 0.501 -- 1.84 -- -1.14 0.113 -- 0.4601 1908 -- --
55.64 0.35 8.81 0.171 1.2 -- -0.752 -- -0.00694 3.23 -- -- -- --
57.44 0.355 8.81 0.186 1.19 -- -- -- -0.00268 3.3 -- -- -- --
60.69 0.363 8.78 0.418 -- 1.93 -- -- 0.17 -- 0.4659 1912 -- --
54.84 0.345 8.82 -- 0.606 1.29 -- -- 0.038 22.9 0.3 668 -- --
138.01 0.549 8.81 0.237 -- -- -- -- 0.0288 -- -- -- -- --
58.35 0.357 8.81 -- 1.2 -- -- -- -0.0234 3.3 -- -- -- --
65.18 0.376 8.77 -- -- 1.83 -- -- 0.135 -- 0.98 1906 -- --
139.49 0.551 8.81 -- -- -- -- -- 0.00254 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 45.36 radiation 1 270 < th dose dependent rect. 7 12
4 45.68 radiation 1 270 < th dose independent rect. 7 12
10 46.37 temperature 10 270 > th dose dependent rect. 10 14
18 46.76 radiation 1 270 > th dose independent sin 0 NA
25 46.99 radiation 1 270 < th dose dependent rect. 13 6
41 47.31 radiation 1 270 < th dose independent rect. 13 6
46 47.43 humidity 50 270 > th dose dependent rect. 14 20
47 47.45 radiation 1 270 < th dose dependent sin 23 NA
48 47.45 temperature 10 90 > th dose dependent rect. 19 23
50 47.51 radiation 1 270 < th dose independent sin 23 NA
51 47.51 humidity 50 270 > th dose dependent rect. 4 15
53 47.61 temperature 10 270 > th dose dependent rect. 19 20
54 47.63 temperature 30 270 < th dose independent rect. 14 7
55 47.64 temperature 30 270 < th dose dependent rect. 14 6
56 47.69 temperature 30 270 < th dose independent rect. 14 19
77 47.85 humidity 50 270 > th dose dependent rect. 14 6
80 47.88 temperature 30 10 < th dose dependent sin 19 NA
81 47.89 humidity 80 270 < th dose independent rect. 8 7
87 47.92 temperature 10 90 > th dose dependent sin 22 NA
92 47.95 temperature 10 10 > th dose dependent sin 21 NA
119 48.06 humidity 50 270 > th dose dependent rect. 15 4
120 48.06 temperature 30 270 < th dose dependent rect. 11 9
128 48.08 humidity 70 90 > th dose dependent rect. 9 11
142 48.16 temperature 30 270 < th dose independent rect. 15 4
145 48.17 temperature 30 270 < th dose independent rect. 3 16
153 48.18 humidity 80 720 < th dose independent rect. 11 2
156 48.18 humidity 70 90 > th dose dependent rect. 7 13
168 48.21 radiation 1 720 < th dose dependent rect. 6 20
188 48.28 temperature 15 10 > th dose dependent rect. 12 15
208 48.33 humidity 70 270 > th dose independent rect. 14 5
209 48.33 temperature 15 10 > th dose dependent rect. 22 20
216 48.35 temperature 20 10 > th dose dependent rect. 12 17
221 48.37 radiation 1 720 < th dose independent rect. 6 20
223 48.37 radiation 1 720 < th dose dependent rect. 22 21
246 48.45 radiation 1 30 < th dose dependent sin 20 NA
271 48.52 humidity 70 90 > th dose dependent rect. 11 9
284 48.55 humidity 80 270 > th dose independent rect. 3 17
292 48.57 radiation 1 270 > th dose independent rect. 8 11
318 48.59 humidity 90 720 < th dose dependent rect. 11 2
339 48.64 humidity 70 90 > th dose dependent sin 21 NA
374 48.70 temperature 10 270 > th dose dependent rect. 8 7
379 48.71 humidity 70 10 > th dose independent sin 18 NA
404 48.75 humidity 80 270 < th dose independent rect. 22 17
407 48.75 humidity 70 270 > th dose dependent sin 0 NA
409 48.75 temperature 20 90 > th dose dependent rect. 6 23
463 48.82 temperature 20 10 > th dose dependent rect. 12 12
467 48.82 temperature 15 30 > th dose dependent rect. 1 17
472 48.83 humidity 60 10 > th dose dependent sin 20 NA
485 48.85 humidity 70 270 > th dose independent rect. 14 19
489 48.85 temperature 30 90 < th dose dependent rect. 11 22
510 48.89 humidity 50 270 > th dose dependent rect. 23 22
526 48.92 temperature 30 90 < th dose dependent rect. 5 16
551 48.95 radiation 1 720 < th dose independent rect. 22 21
584 49.00 humidity 80 270 < th dose independent sin 2 NA
587 49.00 temperature 15 270 > th dose independent rect. 22 16
602 49.01 humidity 80 270 > th dose independent sin 0 NA
606 49.01 humidity 50 270 > th dose independent rect. 14 8
613 49.01 temperature 30 10 < th dose dependent rect. 15 21
641 49.04 temperature 30 270 < th dose dependent rect. 3 17
654 49.05 temperature 30 90 < th dose dependent rect. 14 21
662 49.06 humidity 90 270 < th dose dependent rect. 8 7
677 49.07 humidity 90 270 < th dose dependent rect. 9 15
683 49.08 humidity 80 270 > th dose independent rect. 7 13
684 49.08 radiation 1 720 < th dose independent rect. 23 19
720 49.11 wind 3 43200 < th dose dependent rect. 20 1
739 49.13 wind 3 43200 < th dose independent rect. 20 1
747 49.13 temperature 15 90 > th dose dependent rect. 8 23
768 49.16 temperature 10 90 > th dose dependent no NA NA
808 49.19 temperature 15 720 > th dose dependent rect. 11 4
813 49.19 temperature 20 10 > th dose dependent rect. 8 21
817 49.19 temperature 20 90 > th dose dependent rect. 11 23
852 49.21 temperature 15 10 > th dose dependent rect. 1 15
861 49.22 humidity 70 10 > th dose dependent rect. 15 5
901 49.25 temperature 10 10 > th dose dependent no NA NA
913 49.26 wind 3 43200 > th dose independent rect. 20 1
923 49.26 humidity 90 270 < th dose dependent rect. 17 22
935 49.27 temperature 30 90 < th dose dependent rect. 7 14
970 49.30 temperature 20 30 > th dose dependent rect. 1 23
996 49.32 radiation 40 270 < th dose dependent rect. 15 18