Os01g0943700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0943700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 465.21 | 1.01 | 3.76 | -0.0852 | 0.462 | 2.25 | -0.51 | 0.0326 | 0.689 | 10.9 | 30.97 | 221 | -- | -- |
| 465.2 | 1 | 3.76 | -0.0789 | 0.465 | 2.24 | -0.509 | -- | 0.695 | 10.8 | 30.81 | 220 | -- | -- |
| 466.17 | 1.01 | 3.76 | -0.138 | 0.481 | 2.26 | -- | 0.27 | 0.699 | 11 | 30.56 | 213 | -- | -- |
| 466.27 | 1.01 | 3.76 | -0.0897 | 0.48 | 2.27 | -- | -- | 0.7 | 11.1 | 30.77 | 213 | -- | -- |
| 474.26 | 1.01 | 3.77 | -0.0617 | -- | 2.3 | -- | -0.244 | 0.698 | -- | 31.28 | 360 | -- | -- |
| 531.03 | 1.08 | 3.85 | -0.64 | 0.746 | -- | -0.336 | -- | 0.282 | 6.68 | -- | -- | -- | -- |
| 531.3 | 1.08 | 3.85 | -0.646 | 0.745 | -- | -- | -- | 0.283 | 6.61 | -- | -- | -- | -- |
| 474.33 | 1.01 | 3.77 | -0.107 | -- | 2.27 | -- | -- | 0.692 | -- | 31.09 | 356 | -- | -- |
| 466.47 | 1.01 | 3.75 | -- | 0.484 | 2.3 | -- | -- | 0.717 | 11.2 | 30.73 | 213 | -- | -- |
| 560.26 | 1.11 | 3.86 | -0.628 | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
| 542.3 | 1.09 | 3.83 | -- | 0.737 | -- | -- | -- | 0.355 | 6.66 | -- | -- | -- | -- |
| 474.6 | 1.01 | 3.77 | -- | -- | 2.3 | -- | -- | 0.712 | -- | 31.01 | 360 | -- | -- |
| 570.66 | 1.12 | 3.84 | -- | -- | -- | -- | -- | 0.367 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 462.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 21 |
| 9 | 463.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 10 | 463.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 21 | 465.22 | temperature | 25 | 30 | < th | dose dependent | sin | 21 | NA |
| 27 | 465.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 38 | 466.47 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 43 | 467.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 46 | 467.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 50 | 467.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 55 | 467.46 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 70 | 468.05 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 80 | 468.38 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 19 |
| 125 | 470.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 140 | 470.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 146 | 470.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 150 | 471.05 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 152 | 471.12 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 159 | 471.29 | temperature | 25 | 90 | < th | dose dependent | rect. | 8 | 13 |
| 164 | 471.37 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 171 | 471.48 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 18 | 3 |
| 179 | 471.56 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 14 | 7 |
| 183 | 471.59 | temperature | 25 | 90 | < th | dose dependent | rect. | 8 | 15 |
| 205 | 471.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 256 | 472.84 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 258 | 472.87 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 23 |
| 302 | 473.40 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 23 |
| 316 | 473.61 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 23 |
| 352 | 474.06 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 23 |
| 354 | 474.10 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 23 |
| 372 | 474.30 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 424 | 474.94 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 23 |
| 460 | 475.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 493 | 475.60 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 23 |
| 537 | 475.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 567 | 476.22 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 23 |
| 603 | 476.48 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 618 | 476.61 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 14 | 12 |
| 619 | 476.61 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 14 | 15 |
| 626 | 476.64 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 14 | 21 |
| 631 | 476.67 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 634 | 476.68 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 14 | 19 |
| 666 | 476.90 | atmosphere | 1015 | 1440 | < th | dose independent | sin | 16 | NA |
| 672 | 476.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 8 | 18 |
| 750 | 477.45 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 23 |
| 828 | 477.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 868 | 477.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 872 | 477.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 890 | 478.04 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 950 | 478.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 999 | 478.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 9 |