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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0942300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta glucanase precursor (EC 3.2.1.73) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.44 (0.0601) R2 : 0.62
β1 : 3.95 (0.297) R2dD : 0.295 R2D : -0.27
β2 : 1.88 (0.141) R2dC : 0.148 R2C : 0.143
β3 : -3.83 (0.244) R2dE : 0.222 R2E : 0.101
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -13 (1.1) R2dD*E : 0.222 R2D*E : -0.0822
γ1 : 1.88 (0.125) R2dN8 : 0.254 R2N8 : 0.154
σ : 1.09
deviance : 550.58
__
_____
C
peak time of C : 1.65
E
wheather : radiation
threshold : 1.368
memory length : 4327
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.9
open length of G : 9.82

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
546.05 1.1 5.44 3.99 1.88 -3.85 1.08 -13.3 1.9 1.63 1.441 4327 17.9 9.82
703.56 1.24 5.29 3.82 2.11 -4.32 1.32 -- 2.01 1.6 4.594 4325 17.5 12.2
550.58 1.09 5.44 3.95 1.88 -3.83 -- -13 1.88 1.65 1.368 4327 17.9 9.82
670.62 1.21 5.26 2.96 2.34 -4.4 -- -- 1.97 1.38 3.93 4335 17.7 12.1
718.53 1.25 5.43 3.98 -- -3.93 -- -12.7 1.88 -- 1.55 4310 17.9 9.76
958.06 1.45 5.27 0.824 1.94 -- 1.02 -- 1.79 2.16 -- -- -- --
961.91 1.45 5.28 0.795 1.94 -- -- -- 1.78 2.11 -- -- -- --
754.26 1.28 5.42 2.31 -- -3.42 -- -- 1.49 -- 3.329 10008 17.7 12.3
649.56 1.19 5.44 -- 2.54 -2.83 -- -- 1.44 2.28 2.857 39058 16.9 12.3
1187.83 1.61 5.26 0.876 -- -- -- -- 1.83 -- -- -- -- --
978.57 1.46 5.3 -- 1.96 -- -- -- 1.7 2.12 -- -- -- --
764.29 1.29 5.42 -- -- -3.14 -- -- 1.1 -- 2.502 11424 17.8 13.3
1208.08 1.62 5.28 -- -- -- -- -- 1.73 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 544.19 humidity 90 43200 > th dose independent rect. 9 13
4 545.03 humidity 90 43200 > th dose independent rect. 11 11
5 545.14 humidity 90 43200 > th dose independent rect. 13 9
13 546.08 humidity 90 43200 < th dose independent rect. 11 11
28 547.03 humidity 80 43200 > th dose dependent rect. 9 10
37 548.00 humidity 80 43200 > th dose dependent rect. 12 7
40 548.20 humidity 90 43200 > th dose independent sin 21 NA
42 548.35 humidity 90 43200 < th dose independent rect. 2 20
45 548.47 humidity 90 43200 > th dose dependent rect. 7 16
59 549.12 humidity 90 43200 < th dose independent sin 22 NA
68 549.32 humidity 90 43200 > th dose dependent rect. 8 2
74 549.70 humidity 90 43200 > th dose dependent rect. 20 1
111 550.99 humidity 90 43200 < th dose independent rect. 8 7
130 551.39 humidity 90 43200 > th dose dependent rect. 13 10
132 551.41 humidity 90 43200 > th dose independent rect. 2 20
137 551.49 humidity 90 43200 > th dose dependent sin 21 NA
149 551.75 humidity 80 43200 > th dose dependent rect. 8 7
243 553.67 humidity 90 43200 < th dose independent rect. 20 1
265 554.07 radiation 1 14400 > th dose independent rect. 5 1
268 554.10 radiation 1 14400 < th dose independent rect. 5 1
287 554.29 radiation 1 14400 < th dose independent rect. 18 21
289 554.32 humidity 90 43200 > th dose independent rect. 20 1
306 554.62 radiation 30 14400 < th dose independent rect. 14 18
315 554.78 radiation 1 14400 < th dose independent rect. 18 15
323 554.92 radiation 1 14400 < th dose independent rect. 18 12
339 555.05 humidity 80 43200 > th dose dependent rect. 2 19
360 555.28 humidity 80 43200 > th dose independent rect. 9 9
369 555.43 humidity 90 43200 > th dose independent rect. 7 9
401 555.82 humidity 80 43200 > th dose independent rect. 12 6
406 555.90 humidity 90 43200 < th dose independent rect. 6 22
432 556.15 humidity 90 43200 < th dose independent no NA NA
443 556.28 humidity 90 43200 < th dose independent rect. 19 23
444 556.29 humidity 90 43200 < th dose independent rect. 11 23
450 556.38 radiation 1 14400 > th dose independent rect. 18 21
454 556.40 radiation 1 14400 < th dose independent sin 3 NA
456 556.42 radiation 1 14400 > th dose independent rect. 5 10
458 556.46 radiation 1 14400 < th dose independent rect. 5 10
477 556.57 humidity 90 43200 < th dose independent rect. 13 23
516 556.92 radiation 1 14400 < th dose independent rect. 24 15
519 556.93 radiation 1 14400 < th dose independent rect. 22 17
530 556.95 radiation 1 14400 < th dose independent rect. 20 19
544 557.02 humidity 90 43200 < th dose independent rect. 15 23
547 557.04 radiation 1 14400 > th dose independent sin 3 NA
548 557.04 radiation 1 14400 > th dose independent rect. 18 15
551 557.04 radiation 1 14400 < th dose independent rect. 7 23
555 557.09 radiation 1 14400 > th dose independent rect. 18 12
560 557.13 radiation 1 14400 > th dose independent rect. 7 23
585 557.22 radiation 1 14400 < th dose independent sin 10 NA
650 557.74 radiation 1 14400 > th dose independent rect. 5 4
654 557.76 radiation 1 14400 < th dose independent rect. 5 4
658 557.78 humidity 80 43200 < th dose independent rect. 13 1
701 558.19 humidity 80 43200 > th dose independent rect. 16 1
750 558.38 radiation 1 14400 < th dose independent rect. 10 23
759 558.40 radiation 1 14400 < th dose independent rect. 5 20
767 558.41 radiation 1 14400 < th dose independent rect. 5 16
771 558.44 radiation 1 14400 < th dose independent rect. 5 14
788 558.49 radiation 1 14400 > th dose independent sin 9 NA
791 558.50 radiation 1 14400 < th dose independent rect. 24 6
793 558.51 radiation 1 14400 < th dose independent rect. 24 21
799 558.54 radiation 1 14400 < th dose independent rect. 24 19
813 558.56 radiation 1 14400 < th dose independent no NA NA
817 558.56 radiation 1 14400 < th dose independent rect. 12 23
818 558.56 radiation 1 14400 < th dose independent rect. 20 23
859 558.64 radiation 1 14400 < th dose independent rect. 20 10
880 558.74 humidity 90 43200 > th dose independent no NA NA
903 558.80 humidity 90 43200 > th dose independent rect. 8 2
909 558.81 humidity 90 43200 > th dose independent rect. 11 23
920 558.90 radiation 1 14400 < th dose independent rect. 24 9
922 558.91 radiation 1 14400 < th dose independent rect. 22 11
927 558.93 radiation 1 14400 < th dose independent rect. 20 13
953 559.01 humidity 90 43200 > th dose independent rect. 19 23
983 559.18 humidity 90 43200 < th dose independent rect. 3 8