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Os01g0940800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-1,3-glucanase precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.26 (0.0818) R2 : 0.391
β1 : -0.178 (0.366) R2dD : 0.000549 R2D : -0.00684
β2 : 0.963 (0.195) R2dC : 0.0328 R2C : 0.0198
β3 : 5.86 (0.398) R2dE : 0.384 R2E : 0.324
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.65 (1.5) R2dD*E : 0.0262 R2D*E : -0.0828
γ1 : -0.537 (0.177) R2dN8 : 0.0189 R2N8 : 0.0413
σ : 1.45
deviance : 966.11
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C
peak time of C : 3.47
E
wheather : radiation
threshold : 0.9867
memory length : 1443
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11
open length of G : 19.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
961.78 1.46 7.26 -0.203 0.975 5.83 -1.26 4.67 -0.545 3.78 0.9898 1443 11 19.9
983.82 1.46 7.26 0.439 1 5.37 -1.08 -- -0.479 3.47 0.9836 1438 11 19.8
966.11 1.45 7.26 -0.178 0.963 5.86 -- 4.65 -0.537 3.47 0.9867 1443 11 19.9
987.14 1.46 7.25 0.463 0.972 5.39 -- -- -0.481 3.17 0.98 1438 11 19.8
1000.02 1.47 7.25 -0.0698 -- 6.24 -- 5.04 -0.414 -- 0.8291 1462 10.9 19.9
1428.79 1.77 7.36 -0.681 0.95 -- -1.82 -- -1.14 3.34 -- -- -- --
1438.62 1.78 7.35 -0.647 0.937 -- -- -- -1.13 2.91 -- -- -- --
1023.14 1.49 7.23 0.473 -- 5.34 -- -- -0.469 -- 0.9856 1464 11 19.8
992.46 1.47 7.25 -- 0.981 5.24 -- -- -0.533 3.17 0.9837 1438 11 19.8
1489.27 1.8 7.35 -0.607 -- -- -- -- -1.1 -- -- -- -- --
1449.64 1.78 7.34 -- 0.925 -- -- -- -1.05 2.9 -- -- -- --
1029.07 1.49 7.23 -- -- 5.31 -- -- -0.484 -- 0.98 1464 11 19.8
1498.98 1.81 7.33 -- -- -- -- -- -1.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 934.54 wind 7 43200 > th dose dependent rect. 11 11
6 942.56 wind 7 43200 > th dose dependent rect. 12 6
7 943.30 wind 7 43200 > th dose dependent rect. 14 4
9 943.68 wind 9 43200 > th dose independent rect. 14 7
21 947.92 wind 9 43200 < th dose independent rect. 11 16
22 948.05 wind 9 43200 < th dose independent rect. 14 7
26 949.22 wind 9 43200 < th dose independent rect. 12 11
28 949.70 wind 7 43200 > th dose dependent rect. 15 1
30 949.86 wind 9 43200 > th dose independent rect. 12 15
37 950.41 wind 9 43200 > th dose independent rect. 12 12
75 956.71 wind 7 43200 < th dose independent rect. 17 1
113 963.93 wind 7 43200 > th dose independent rect. 17 1
115 964.06 radiation 1 1440 < th dose independent rect. 11 20
137 966.13 wind 7 43200 > th dose independent rect. 12 2
138 966.14 wind 7 43200 > th dose independent rect. 11 7
153 967.61 wind 7 43200 < th dose independent rect. 12 2
177 970.51 wind 9 43200 < th dose independent sin 17 NA
183 971.63 wind 9 43200 > th dose independent sin 17 NA
190 972.36 wind 7 43200 > th dose independent rect. 11 5
209 974.65 radiation 1 1440 > th dose independent rect. 11 20
252 979.79 wind 7 43200 > th dose dependent sin 17 NA
254 980.07 wind 7 43200 < th dose independent rect. 11 5
285 983.33 wind 5 43200 > th dose dependent rect. 12 2
292 983.58 wind 7 43200 > th dose independent sin 20 NA
384 990.39 radiation 1 1440 < th dose independent sin 13 NA
466 995.81 wind 7 43200 > th dose independent rect. 3 19
494 997.42 radiation 1 1440 < th dose independent rect. 17 23
501 998.17 wind 7 43200 < th dose independent rect. 3 19
504 998.36 radiation 1 1440 < th dose independent rect. 5 20
506 998.44 radiation 1 1440 < th dose independent rect. 5 22
516 998.73 radiation 1 1440 < th dose independent rect. 2 23
517 998.74 radiation 1 1440 < th dose independent rect. 5 14
523 998.79 radiation 1 1440 < th dose independent rect. 20 23
532 998.88 radiation 1 1440 < th dose independent no NA NA
539 998.97 radiation 1 1440 < th dose independent rect. 23 23
557 999.13 radiation 1 1440 < th dose independent rect. 2 17
576 999.58 wind 7 43200 > th dose independent rect. 3 15
598 1000.79 radiation 1 1440 > th dose independent sin 13 NA
607 1001.42 wind 7 43200 < th dose independent rect. 3 15
663 1003.76 radiation 1 1440 < th dose dependent rect. 9 22
667 1003.87 radiation 1 1440 < th dose dependent rect. 11 20
697 1004.80 wind 7 43200 > th dose independent rect. 16 23
720 1005.53 wind 7 43200 < th dose independent rect. 16 23
721 1005.67 wind 7 43200 > th dose independent rect. 21 21
737 1006.38 wind 7 43200 > th dose independent rect. 21 23
740 1006.52 wind 7 43200 < th dose independent rect. 21 21
744 1006.62 wind 7 43200 > th dose independent rect. 19 23
758 1007.20 radiation 1 1440 > th dose independent rect. 5 14
776 1007.56 wind 7 43200 < th dose independent rect. 19 23
785 1007.74 radiation 1 1440 > th dose independent no NA NA
836 1007.88 temperature 25 1440 > th dose dependent rect. 14 19
842 1007.98 wind 7 43200 < th dose independent rect. 21 23
861 1008.85 radiation 1 1440 > th dose independent rect. 17 23
870 1009.08 wind 7 43200 > th dose independent no NA NA
910 1010.65 wind 7 43200 < th dose independent no NA NA
978 1014.20 temperature 25 1440 > th dose dependent rect. 13 12
986 1014.58 temperature 25 1440 > th dose dependent rect. 13 8