Os01g0940600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0940600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.48 | 0.397 | 13.5 | 0.187 | 2.57 | -0.676 | -0.111 | -1.32 | -0.599 | 19.2 | 39.5 | 71 | 4.15 | 19 |
| 77.75 | 0.411 | 13.5 | 0.213 | 2.59 | -0.667 | -0.207 | -- | -0.604 | 19.2 | 40.07 | 70 | 4.15 | 19 |
| 71.41 | 0.394 | 13.5 | 0.188 | 2.58 | -0.682 | -- | -1.28 | -0.6 | 19.2 | 40.09 | 70 | 4.18 | 19 |
| 77.83 | 0.411 | 13.5 | 0.205 | 2.59 | -0.663 | -- | -- | -0.601 | 19.2 | 40.09 | 69 | 4.2 | 18.9 |
| 376.6 | 0.904 | 13.5 | 0.152 | -- | -0.795 | -- | -0.386 | -0.661 | -- | 107.5 | 28 | 2.86 | 19.6 |
| 102.33 | 0.474 | 13.5 | 0.184 | 2.44 | -- | -0.251 | -- | -0.616 | 19.7 | -- | -- | -- | -- |
| 102.51 | 0.474 | 13.5 | 0.19 | 2.44 | -- | -- | -- | -0.616 | 19.7 | -- | -- | -- | -- |
| 104.93 | 0.477 | 13.5 | 0.286 | -- | -1.83 | -- | -- | -0.645 | -- | 975.5 | 247 | 1.6 | 8.73 |
| 78.77 | 0.413 | 13.5 | -- | 2.57 | -0.669 | -- | -- | -0.603 | 19.1 | 40.09 | 69 | 4.25 | 18.8 |
| 422.48 | 0.96 | 13.5 | 0.158 | -- | -- | -- | -- | -0.652 | -- | -- | -- | -- | -- |
| 103.45 | 0.476 | 13.5 | -- | 2.44 | -- | -- | -- | -0.637 | 19.7 | -- | -- | -- | -- |
| 85.4 | 0.43 | 13.4 | -- | -- | -2.51 | -- | -- | -0.541 | -- | 103.7 | 420 | 0.0167 | 8.21 |
| 423.13 | 0.96 | 13.5 | -- | -- | -- | -- | -- | -0.669 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.44 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 19 |
| 2 | 74.04 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 5 | 75.23 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 6 | 75.23 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 9 | 75.88 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 10 | 75.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 11 | 75.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 13 | 75.99 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 14 | 76.00 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 15 | 76.04 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 17 | 76.13 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 19 | 76.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 20 | 76.13 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 23 | 76.13 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 25 | 76.13 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 28 | 76.13 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 33 | 76.20 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 34 | 76.22 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 39 | 76.35 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 45 | 76.63 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 8 |
| 49 | 76.69 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 50 | 76.77 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 51 | 76.79 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 52 | 76.80 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 69 | 76.90 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 71 | 76.97 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 72 | 76.97 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 77 | 77.04 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 84 | 77.22 | wind | 5.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 85 | 77.26 | wind | 5.0 | 90 | < th | dose independent | rect. | 23 | 5 |
| 97 | 77.58 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 98 | 77.58 | wind | 9.0 | 90 | < th | dose dependent | rect. | 22 | 6 |
| 106 | 77.71 | wind | 5.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 110 | 77.77 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 113 | 77.87 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 130 | 77.99 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 3 |
| 131 | 77.99 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 149 | 78.03 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 151 | 78.03 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 152 | 78.03 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 154 | 78.03 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 155 | 78.03 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 156 | 78.03 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 157 | 78.03 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 158 | 78.04 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 187 | 78.14 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 22 |
| 189 | 78.17 | temperature | 15.0 | 90 | > th | dose independent | rect. | 4 | 19 |
| 196 | 78.26 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 19 |
| 198 | 78.33 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 23 | 5 |
| 202 | 78.33 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 23 | 5 |
| 207 | 78.38 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 209 | 78.41 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 24 | 5 |
| 216 | 78.44 | temperature | 10.0 | 90 | > th | dose independent | rect. | 23 | 5 |
| 217 | 78.44 | temperature | 30.0 | 90 | < th | dose independent | rect. | 23 | 5 |
| 218 | 78.44 | humidity | 50.0 | 90 | > th | dose independent | rect. | 23 | 5 |
| 221 | 78.44 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 23 | 5 |
| 222 | 78.44 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 5 |
| 227 | 78.44 | wind | 5.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 229 | 78.44 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 5 |
| 243 | 78.45 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 257 | 78.55 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 19 |
| 262 | 78.58 | wind | 9.0 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 295 | 78.68 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 6 |
| 296 | 78.68 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 298 | 78.69 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 307 | 78.73 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 359 | 78.86 | temperature | 10.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 360 | 78.86 | temperature | 30.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 361 | 78.86 | humidity | 50.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 364 | 78.86 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 365 | 78.86 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 370 | 78.86 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 372 | 78.86 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 388 | 78.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 2 |
| 391 | 78.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 434 | 79.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 435 | 79.02 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 436 | 79.02 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 439 | 79.02 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 440 | 79.02 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 446 | 79.02 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 451 | 79.03 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 18 |
| 452 | 79.03 | wind | 9.0 | 90 | < th | dose independent | rect. | 4 | 19 |
| 454 | 79.03 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 467 | 79.09 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 500 | 79.29 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 557 | 79.35 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 558 | 79.35 | wind | 9.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 573 | 79.40 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 574 | 79.41 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 591 | 79.45 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 23 | 5 |
| 597 | 79.47 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 601 | 79.48 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 625 | 79.54 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 654 | 79.62 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 655 | 79.63 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 7 |
| 657 | 79.63 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 658 | 79.64 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 671 | 79.66 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 18 |
| 672 | 79.66 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 18 |
| 683 | 79.76 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 684 | 79.76 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 685 | 79.76 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 688 | 79.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 689 | 79.76 | radiation | 1.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 698 | 79.76 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 715 | 79.82 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 4 | 7 |
| 717 | 79.86 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 18 |
| 718 | 79.87 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 723 | 79.89 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 19 |
| 726 | 79.91 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 728 | 79.91 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 15 |
| 749 | 79.98 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 755 | 79.99 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 22 | 6 |
| 774 | 80.02 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 792 | 80.05 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 18 |
| 850 | 80.13 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 907 | 80.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 920 | 80.27 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 955 | 80.32 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 4 | 9 |