Os01g0939200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0939200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.1 | 0.415 | 6.36 | 0.562 | 0.686 | 0.704 | -0.143 | 0.727 | 0.182 | 12.6 | 21.2 | 859 | -- | -- |
| 79.74 | 0.416 | 6.37 | 0.477 | 0.67 | 0.602 | -0.302 | -- | 0.203 | 12.6 | 21.5 | 858 | -- | -- |
| 78.18 | 0.412 | 6.36 | 0.569 | 0.686 | 0.705 | -- | 0.778 | 0.185 | 12.6 | 21.23 | 858 | -- | -- |
| 79.81 | 0.416 | 6.38 | 0.407 | 0.672 | 0.637 | -- | -- | 0.16 | 12.5 | 21.5 | 849 | -- | -- |
| 102.34 | 0.471 | 6.35 | 0.537 | -- | 0.647 | -- | 0.959 | 0.208 | -- | 21.4 | 1769 | -- | -- |
| 93.44 | 0.453 | 6.35 | 0.632 | 0.592 | -- | -0.249 | -- | 0.32 | 13 | -- | -- | -- | -- |
| 93.7 | 0.453 | 6.35 | 0.623 | 0.592 | -- | -- | -- | 0.318 | 13 | -- | -- | -- | -- |
| 104.81 | 0.477 | 6.38 | 0.37 | -- | 0.539 | -- | -- | 0.157 | -- | 21.54 | 1793 | -- | -- |
| 83.27 | 0.425 | 6.39 | -- | 0.699 | 0.75 | -- | -- | 0.093 | 12.6 | 21.5 | 901 | -- | -- |
| 115.48 | 0.502 | 6.36 | 0.6 | -- | -- | -- | -- | 0.307 | -- | -- | -- | -- | -- |
| 103.92 | 0.477 | 6.36 | -- | 0.582 | -- | -- | -- | 0.249 | 13 | -- | -- | -- | -- |
| 107.25 | 0.482 | 6.42 | -- | -- | 0.714 | -- | -- | 0.0485 | -- | 21.51 | 3150 | -- | -- |
| 124.99 | 0.522 | 6.37 | -- | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.75 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 18 |
| 3 | 78.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 4 | 78.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 5 | 79.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 9 |
| 18 | 79.38 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 20 | 79.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 36 | 79.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 41 | 79.55 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 49 | 79.58 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 52 | 79.59 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 13 |
| 60 | 79.65 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 11 |
| 63 | 79.68 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 75 | 79.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 85 | 79.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 22 |
| 91 | 79.82 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 93 | 79.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 103 | 79.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 110 | 79.88 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 149 | 80.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 158 | 80.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 165 | 80.11 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |
| 179 | 80.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 210 | 80.26 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 285 | 80.58 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 18 |
| 310 | 80.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 324 | 80.69 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 11 |
| 330 | 80.72 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 14 |
| 353 | 80.76 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 369 | 80.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 5 |
| 386 | 80.84 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 414 | 80.92 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 21 |
| 459 | 81.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 462 | 81.02 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 466 | 81.03 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 467 | 81.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 477 | 81.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 493 | 81.08 | temperature | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 505 | 81.10 | temperature | 20 | 720 | > th | dose independent | sin | 12 | NA |
| 533 | 81.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 576 | 81.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 579 | 81.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 603 | 81.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 662 | 81.22 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 20 |
| 795 | 81.30 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 984 | 81.42 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 985 | 81.42 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 23 |