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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0938400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.56 (0.0554) R2 : 0.11
β1 : -1.09 (0.2) R2dD : 0.062 R2D : 0.0263
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.476 (0.265) R2dE : 0.00781 R2E : -0.0155
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.71 (1.14) R2dD*E : 0.0655 R2D*E : 0.0377
γ1 : -0.241 (0.13) R2dN8 : 0.011 R2N8 : 0.00928
σ : 1.01
deviance : 473.12
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1009
memory length : 279
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
443.76 0.99 3.57 -1.11 0.528 0.511 -2.52 -6.06 -0.253 5.44 1009 271 -- --
464.61 1.01 3.56 -0.91 0.497 -0.822 -2.46 -- -0.442 5.1 1002 479 -- --
458.63 0.997 3.56 -1.11 0.534 0.53 -- -5.82 -0.245 6.23 1009 273 -- --
478.57 1.03 3.55 -0.906 0.509 -0.813 -- -- -0.429 6.21 1002 479 -- --
473.12 1.01 3.56 -1.09 -- 0.476 -- -5.71 -0.241 -- 1009 279 -- --
472.98 1.02 3.55 -0.995 0.51 -- -2.43 -- -0.401 5.09 -- -- -- --
486.76 1.03 3.54 -0.99 0.52 -- -- -- -0.389 6.12 -- -- -- --
492.03 1.04 3.56 -0.889 -- -0.841 -- -- -0.419 -- 1002 479 -- --
499.72 1.05 3.53 -- 0.495 -1.01 -- -- -0.34 6.33 1002 479 -- --
500.79 1.05 3.55 -0.975 -- -- -- -- -0.377 -- -- -- -- --
512.57 1.06 3.52 -- 0.506 -- -- -- -0.278 6.22 -- -- -- --
512.23 1.06 3.54 -- -- -1.06 -- -- -0.33 -- 1002 3 -- --
525.87 1.07 3.53 -- -- -- -- -- -0.269 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 431.61 humidity 80 1440 > th dose independent rect. 7 2
2 432.32 humidity 80 1440 < th dose independent rect. 7 2
12 436.36 humidity 80 1440 > th dose independent rect. 1 9
16 436.53 wind 3 90 > th dose dependent rect. 8 1
19 436.57 humidity 80 1440 < th dose independent rect. 2 8
21 436.77 humidity 80 4320 < th dose dependent rect. 5 3
22 436.80 humidity 80 4320 < th dose dependent rect. 7 1
23 436.87 wind 9 1440 < th dose dependent rect. 2 1
32 437.36 wind 1 1440 > th dose dependent rect. 2 1
38 437.87 atmosphere 1015 1440 < th dose independent rect. 24 15
44 438.25 atmosphere 1005 270 > th dose independent rect. 8 14
49 438.50 atmosphere 1015 1440 < th dose independent rect. 11 5
55 438.59 atmosphere 1015 1440 < th dose independent rect. 11 8
62 438.73 atmosphere 1015 1440 < th dose independent rect. 8 8
64 438.78 atmosphere 1015 1440 < th dose independent rect. 8 12
91 438.92 wind 5 4320 > th dose dependent rect. 18 1
107 439.07 wind 3 4320 > th dose independent rect. 24 2
115 439.13 humidity 80 14400 < th dose independent rect. 22 1
124 439.36 wind 3 4320 > th dose dependent rect. 24 2
125 439.38 atmosphere 1015 1440 < th dose independent sin 2 NA
126 439.38 wind 7 4320 < th dose independent rect. 17 3
134 439.49 humidity 70 1440 > th dose independent rect. 20 15
147 439.71 temperature 25 10 < th dose independent rect. 10 1
149 439.72 atmosphere 1015 1440 > th dose independent rect. 24 15
174 440.17 atmosphere 1015 1440 > th dose independent rect. 11 4
182 440.20 wind 7 4320 > th dose independent rect. 17 2
184 440.21 wind 3 4320 < th dose independent rect. 24 2
189 440.27 atmosphere 1010 270 < th dose dependent sin 20 NA
203 440.43 humidity 70 270 < th dose independent rect. 9 1
268 440.67 atmosphere 1015 1440 > th dose independent sin 1 NA
274 440.73 wind 7 4320 > th dose independent rect. 15 5
276 440.73 wind 5 4320 > th dose dependent rect. 17 3
277 440.75 atmosphere 1015 1440 > th dose dependent rect. 11 4
283 440.76 humidity 70 90 < th dose independent rect. 8 3
305 440.97 wind 7 4320 < th dose independent rect. 15 5
312 441.01 atmosphere 1005 270 > th dose independent rect. 7 18
315 441.02 atmosphere 1010 720 > th dose dependent rect. 1 2
334 441.26 atmosphere 1015 1440 > th dose independent rect. 13 2
351 441.44 atmosphere 1005 270 < th dose independent rect. 6 16
378 441.71 atmosphere 1005 270 > th dose independent sin 21 NA
401 441.84 atmosphere 1010 270 < th dose dependent rect. 5 20
408 441.93 atmosphere 1015 1440 > th dose dependent rect. 13 2
417 442.01 radiation 20 10 < th dose independent rect. 10 1
435 442.05 wind 1 4320 > th dose dependent rect. 17 10
459 442.22 wind 7 1440 < th dose independent rect. 24 9
492 442.35 atmosphere 1010 90 < th dose dependent rect. 12 23
507 442.41 atmosphere 1015 1440 > th dose dependent rect. 24 14
508 442.45 wind 9 4320 < th dose dependent rect. 17 10
521 442.60 atmosphere 1005 270 < th dose independent sin 21 NA
529 442.63 atmosphere 1010 270 < th dose dependent rect. 9 14
531 442.66 wind 7 4320 > th dose independent rect. 15 14
532 442.66 wind 7 4320 > th dose independent rect. 15 16
533 442.67 atmosphere 995 270 > th dose dependent sin 20 NA
536 442.69 humidity 50 4320 > th dose independent rect. 4 7
543 442.78 wind 7 4320 < th dose independent rect. 14 16
677 443.12 atmosphere 1015 1440 > th dose dependent sin 0 NA
735 443.33 wind 7 90 > th dose independent rect. 3 6
798 443.53 atmosphere 995 30 > th dose dependent sin 18 NA
851 443.73 atmosphere 1010 30 < th dose dependent rect. 13 21
867 443.82 atmosphere 1015 4320 > th dose dependent rect. 4 1
897 443.99 wind 7 4320 < th dose independent sin 16 NA
911 444.04 humidity 80 270 > th dose independent rect. 1 9
926 444.09 wind 7 4320 > th dose dependent rect. 15 4
944 444.17 wind 7 4320 > th dose independent sin 16 NA
951 444.19 temperature 25 90 < th dose independent rect. 5 5
965 444.22 wind 7 90 > th dose dependent rect. 3 6
984 444.27 wind 5 4320 > th dose dependent rect. 15 7
992 444.30 wind 3 4320 > th dose dependent sin 13 NA