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Os01g0937300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.22 (0.0191) R2 : 0.0684
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.233 (0.0403) R2dN8 : 0.0883 R2N8 : 0.0684
σ : 0.361
deviance : 59.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.47 0.32 6.25 -0.324 0.783 -0.593 -0.543 0.183 -0.272 23 21.95 10 -- --
46.51 0.318 6.25 -0.33 0.782 -0.59 -0.373 -- -0.269 23 22.16 9 -- --
46.76 0.318 6.25 -0.316 0.783 -0.592 -- -0.245 -0.27 22.9 22.32 9 -- --
47.07 0.32 6.25 -0.309 0.787 -0.594 -- -- -0.271 23 22.09 9 -- --
52.19 0.338 6.22 -0.266 -- 0.204 -- -0.293 -0.248 -- 0.007889 6 -- --
53.14 0.342 6.23 -0.3 0.262 -- -0.324 -- -0.264 21 -- -- -- --
53.45 0.342 6.23 -0.288 0.268 -- -- -- -0.263 20.5 -- -- -- --
52.77 0.34 6.22 -0.277 -- 0.204 -- -- -0.252 -- 0.06 3 -- --
49.57 0.328 6.24 -- 0.775 -0.581 -- -- -0.237 22.9 21.94 9 -- --
57.47 0.354 6.23 -0.289 -- -- -- -- -0.265 -- -- -- -- --
55.64 0.349 6.23 -- 0.269 -- -- -- -0.231 20.4 -- -- -- --
54.8 0.346 6.22 -- -- 0.208 -- -- -0.221 -- 0.06 3 -- --
59.68 0.361 6.22 -- -- -- -- -- -0.233 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.26 temperature 15.0 270 > th dose independent rect. 18 8
2 42.47 humidity 70.0 270 > th dose dependent rect. 1 6
7 42.62 atmosphere 1000.0 270 > th dose independent rect. 1 5
15 42.82 radiation 1.0 270 < th dose independent rect. 2 6
19 42.88 humidity 80.0 270 > th dose independent rect. 1 5
22 42.90 radiation 1.0 90 > th dose independent rect. 7 8
28 42.95 radiation 1.0 270 < th dose dependent rect. 2 4
32 43.00 temperature 15.0 270 > th dose independent rect. 6 19
35 43.05 radiation 1.0 270 < th dose dependent rect. 2 6
39 43.11 radiation 1.0 270 < th dose independent rect. 2 12
44 43.13 radiation 1.0 270 > th dose independent rect. 18 20
55 43.22 radiation 1.0 270 > th dose independent rect. 5 9
57 43.23 atmosphere 995.0 270 > th dose dependent rect. 1 5
68 43.26 wind 7.0 270 < th dose independent rect. 6 19
77 43.31 wind 9.0 270 < th dose dependent rect. 6 19
83 43.35 wind 7.0 270 < th dose independent rect. 17 9
87 43.36 radiation 1.0 270 < th dose dependent rect. 2 12
94 43.41 wind 9.0 270 < th dose independent rect. 6 8
96 43.42 radiation 1.0 270 > th dose independent sin 3 NA
102 43.44 atmosphere 1000.0 90 > th dose independent rect. 15 16
120 43.47 atmosphere 995.0 270 > th dose dependent rect. 2 3
127 43.49 humidity 50.0 270 > th dose independent rect. 18 8
128 43.49 radiation 20.0 270 < th dose independent rect. 18 8
131 43.49 temperature 10.0 270 > th dose independent rect. 2 16
132 43.49 atmosphere 1015.0 270 < th dose independent rect. 2 16
133 43.49 precipitation 0.1 270 < th dose independent rect. 6 19
135 43.49 precipitation 0.1 270 < th dose dependent rect. 6 19
141 43.50 radiation 30.0 270 < th dose dependent rect. 18 8
144 43.52 precipitation 0.1 270 < th dose independent rect. 6 8
145 43.52 precipitation 0.1 270 < th dose dependent rect. 6 8
146 43.53 temperature 10.0 270 > th dose independent rect. 6 8
147 43.53 atmosphere 995.0 270 > th dose independent rect. 6 8
148 43.53 atmosphere 1015.0 270 < th dose independent rect. 6 8
149 43.53 temperature 10.0 270 > th dose independent rect. 14 16
151 43.54 precipitation 0.1 270 < th dose independent rect. 18 8
154 43.54 precipitation 0.1 270 < th dose dependent rect. 18 8
158 43.56 radiation 40.0 270 < th dose independent rect. 13 17
166 43.58 wind 9.0 270 < th dose independent rect. 1 5
167 43.58 temperature 10.0 270 > th dose independent rect. 1 5
169 43.58 temperature 30.0 270 < th dose independent rect. 1 5
170 43.58 humidity 50.0 270 > th dose independent rect. 1 5
174 43.58 atmosphere 1015.0 270 < th dose independent rect. 1 5
175 43.58 radiation 20.0 270 < th dose independent rect. 1 5
182 43.59 atmosphere 995.0 270 > th dose independent rect. 18 8
189 43.61 radiation 1.0 270 < th dose independent sin 3 NA
212 43.63 atmosphere 995.0 270 > th dose independent rect. 2 16
213 43.63 radiation 40.0 10 < th dose dependent rect. 14 18
214 43.64 humidity 50.0 270 > th dose independent rect. 6 8
222 43.65 humidity 80.0 90 > th dose independent rect. 3 6
225 43.65 atmosphere 1000.0 10 > th dose independent rect. 15 17
240 43.68 wind 9.0 270 < th dose dependent rect. 17 8
339 43.88 precipitation 0.1 270 < th dose independent rect. 1 5
342 43.88 precipitation 0.1 270 < th dose dependent rect. 1 5
372 43.97 wind 9.0 270 < th dose independent rect. 14 16
386 43.98 radiation 1.0 270 < th dose dependent sin 3 NA
387 43.98 temperature 10.0 270 > th dose dependent rect. 2 4
426 44.04 wind 1.0 270 > th dose independent rect. 2 3
434 44.05 temperature 30.0 270 < th dose independent rect. 18 8
449 44.08 wind 9.0 270 < th dose independent rect. 2 16
450 44.08 precipitation 0.1 270 < th dose independent rect. 2 16
455 44.08 precipitation 0.1 270 < th dose dependent rect. 2 16
456 44.10 humidity 50.0 270 > th dose independent rect. 6 19
497 44.17 radiation 20.0 10 < th dose dependent rect. 4 14
510 44.22 wind 1.0 270 > th dose independent rect. 1 5
511 44.22 temperature 15.0 10 > th dose independent rect. 8 18
513 44.22 wind 9.0 270 < th dose dependent rect. 6 8
540 44.27 temperature 15.0 10 > th dose independent rect. 8 20
549 44.28 precipitation 0.1 270 < th dose independent rect. 14 16
552 44.28 precipitation 0.1 270 < th dose dependent rect. 14 16
608 44.37 atmosphere 995.0 270 > th dose independent rect. 6 19
624 44.39 radiation 20.0 10 < th dose dependent rect. 4 17
639 44.41 wind 1.0 270 > th dose independent rect. 13 16
692 44.48 atmosphere 1000.0 10 > th dose independent rect. 2 6
720 44.50 wind 1.0 270 > th dose independent rect. 6 7
733 44.51 wind 9.0 270 < th dose dependent rect. 2 4
748 44.52 radiation 10.0 10 < th dose independent rect. 4 17
798 44.57 radiation 1.0 10 > th dose independent rect. 7 9
853 44.63 atmosphere 1000.0 10 > th dose independent rect. 4 4
882 44.66 radiation 30.0 10 < th dose independent rect. 14 18
910 44.70 humidity 90.0 90 < th dose independent rect. 7 8
926 44.73 radiation 20.0 10 < th dose dependent sin 1 NA
944 44.75 atmosphere 1015.0 270 < th dose independent rect. 6 19
954 44.76 temperature 15.0 10 > th dose independent rect. 21 7
955 44.76 radiation 10.0 10 < th dose independent rect. 4 14
966 44.77 wind 1.0 270 > th dose independent rect. 18 8