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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0937100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xylanase inhibitor precursor (Xylanase inhibitor TAXI-I).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.77 (0.0953) R2 : 0.312
β1 : -5.8 (0.449) R2dD : 0.501 R2D : 0.138
β2 : 1.19 (0.264) R2dC : 0.0403 R2C : -0.0248
β3 : 0.987 (0.274) R2dE : 0.0339 R2E : -0.0866
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.54 (1.31) R2dD*E : 0.0735 R2D*E : -0.209
γ1 : -1.55 (0.242) R2dN8 : 0.137 R2N8 : -0.0683
σ : 1.66
deviance : 1263.34
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_____
C
peak time of C : 6.32
E
wheather : temperature
threshold : 25.07
memory length : 310
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13.4
open length of G : 19.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1262.35 1.67 4.78 -5.92 1.17 0.982 -0.808 -7.04 -1.59 6.34 25.07 308 13.5 19.7
1315.41 1.69 4.72 -4.59 0.989 0.909 1.28 -- -1.3 6.4 24.03 307 13.5 19.3
1263.34 1.66 4.77 -5.8 1.19 0.987 -- -6.54 -1.55 6.32 25.07 310 13.4 19.6
1310.5 1.69 4.66 -4.28 0.969 0.843 -- -- -1.06 7.17 24.07 293 13.9 17.3
1318.91 1.69 4.83 -6.16 -- 0.7 -- -7.36 -1.52 -- 24.9 247 14.6 18.8
1344.52 1.72 4.57 -4.14 0.831 -- 1.19 -- -0.746 5.44 -- -- -- --
1348.03 1.72 4.58 -4.14 0.838 -- -- -- -0.752 5.34 -- -- -- --
1324.28 1.69 4.66 -4.35 -- 0.866 -- -- -1.06 -- 23.98 107 23.8 9.25
1786.32 1.97 4.49 -- 0.743 0.42 -- -- -0.447 6.86 20.35 59 15.6 17.5
1384.67 1.74 4.59 -4.11 -- -- -- -- -0.731 -- -- -- -- --
1799.79 1.98 4.47 -- 0.769 -- -- -- -0.291 5.55 -- -- -- --
1784.58 1.97 4.53 -- -- 0.683 -- -- -0.384 -- 20 76 23.8 9.77
1830.57 2 4.49 -- -- -- -- -- -0.275 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1265.76 temperature 25.0 270 > th dose independent rect. 14 19
17 1281.87 temperature 25.0 14400 > th dose dependent rect. 24 1
18 1282.19 temperature 25.0 720 > th dose dependent rect. 21 2
21 1282.87 temperature 25.0 43200 > th dose independent rect. 4 4
22 1282.89 temperature 25.0 43200 > th dose independent rect. 2 6
24 1283.04 temperature 25.0 43200 < th dose independent rect. 6 1
26 1283.12 temperature 25.0 43200 > th dose independent rect. 6 1
29 1283.21 temperature 25.0 43200 < th dose independent rect. 4 4
36 1283.52 temperature 25.0 43200 > th dose independent rect. 2 1
48 1283.88 temperature 25.0 43200 > th dose dependent rect. 8 1
50 1284.00 temperature 30.0 43200 > th dose independent rect. 11 1
52 1284.01 temperature 25.0 270 > th dose independent rect. 14 11
56 1284.09 temperature 30.0 43200 < th dose independent rect. 11 1
67 1284.47 temperature 25.0 43200 > th dose dependent rect. 5 4
128 1285.37 temperature 25.0 14400 < th dose independent rect. 1 3
140 1285.53 temperature 25.0 14400 < th dose independent rect. 1 1
156 1285.75 humidity 50.0 1440 < th dose independent rect. 16 1
203 1286.24 temperature 30.0 43200 > th dose independent rect. 17 1
206 1286.27 humidity 50.0 1440 < th dose dependent rect. 16 1
207 1286.27 precipitation 0.1 43200 > th dose dependent rect. 3 14
215 1286.37 temperature 25.0 43200 > th dose dependent rect. 19 16
223 1286.41 atmosphere 1005.0 270 < th dose dependent rect. 7 13
243 1286.59 temperature 25.0 43200 > th dose independent sin 9 NA
257 1286.70 temperature 25.0 43200 > th dose dependent sin 8 NA
289 1286.82 temperature 30.0 43200 > th dose independent rect. 17 19
326 1287.10 temperature 30.0 43200 < th dose independent rect. 17 19
331 1287.16 temperature 30.0 43200 < th dose independent rect. 17 1
351 1287.21 temperature 25.0 43200 < th dose independent sin 9 NA
394 1287.33 temperature 30.0 43200 < th dose independent rect. 17 21
404 1287.37 temperature 25.0 43200 > th dose dependent rect. 19 1
432 1287.49 temperature 30.0 43200 < th dose independent rect. 24 15
435 1287.50 temperature 30.0 43200 < th dose independent rect. 8 7
451 1287.52 precipitation 0.1 43200 > th dose independent rect. 2 15
461 1287.56 temperature 30.0 43200 < th dose independent rect. 17 10
471 1287.56 temperature 30.0 43200 > th dose independent rect. 15 21
483 1287.59 temperature 30.0 43200 < th dose independent sin 5 NA
484 1287.59 temperature 30.0 43200 < th dose independent rect. 17 5
485 1287.59 temperature 30.0 43200 < th dose independent rect. 17 8
530 1287.69 temperature 30.0 43200 < th dose independent rect. 15 21
532 1287.70 precipitation 0.1 43200 < th dose independent rect. 2 15
534 1287.70 temperature 30.0 43200 < th dose independent rect. 13 23
535 1287.70 precipitation 0.1 43200 < th dose dependent rect. 2 15
570 1287.76 temperature 30.0 43200 > th dose independent sin 5 NA
644 1287.83 temperature 30.0 43200 < th dose independent rect. 10 23
648 1287.84 temperature 30.0 43200 < th dose independent rect. 10 9
649 1287.84 temperature 30.0 43200 < th dose independent rect. 10 12
650 1287.84 temperature 30.0 43200 < th dose independent rect. 10 15
651 1287.84 temperature 30.0 43200 < th dose independent rect. 10 17
653 1287.84 temperature 30.0 43200 < th dose independent rect. 10 20
674 1287.86 temperature 30.0 43200 < th dose independent no NA NA
798 1287.88 temperature 30.0 43200 > th dose dependent rect. 16 2
809 1287.91 temperature 30.0 43200 > th dose independent rect. 10 23
854 1287.95 temperature 30.0 43200 > th dose independent no NA NA
988 1287.99 temperature 30.0 43200 < th dose independent rect. 13 1