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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0937000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0163) R2 : 0.000702
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0194 (0.0343) R2dN8 : 0.000906 R2N8 : 0.000702
σ : 0.307
deviance : 43.31
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.1 0.294 3.02 -0.206 0.0784 -0.308 0.0783 3.13 -0.049 9.69 29.9 10 -- --
42.17 0.305 2.99 0.0652 0.0951 -0.0854 0.00805 -- -0.0148 9.21 29.58 6 -- --
39.12 0.291 3.02 -0.201 0.0786 -0.307 -- 3.11 -0.0486 9.5 29.9 9 -- --
42.17 0.304 2.99 0.0655 0.095 -0.0852 -- -- -0.0148 9.23 29.58 6 -- --
39.48 0.293 3.02 -0.21 -- -0.321 -- 3.2 -0.0494 -- 29.93 9 -- --
42.49 0.306 2.99 0.0781 0.105 -- -0.0151 -- -0.0106 10.5 -- -- -- --
42.49 0.305 2.99 0.0774 0.105 -- -- -- -0.0106 10.4 -- -- -- --
42.68 0.304 2.99 0.0606 -- -0.0939 -- -- -0.0163 -- 29.43 5 -- --
42.28 0.304 2.99 -- 0.0948 -0.0906 -- -- -0.0223 9.09 29.58 6 -- --
43.16 0.307 2.99 0.0757 -- -- -- -- -0.011 -- -- -- -- --
42.65 0.305 2.99 -- 0.104 -- -- -- -0.0193 10.4 -- -- -- --
42.78 0.305 2.99 -- -- -0.0986 -- -- -0.0232 -- 29.49 5 -- --
43.31 0.307 2.99 -- -- -- -- -- -0.0194 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.11 radiation 20.0 30 > th dose independent rect. 12 1
2 33.15 temperature 20.0 30 > th dose dependent rect. 12 1
6 33.21 temperature 10.0 1440 > th dose independent rect. 13 1
10 33.21 atmosphere 995.0 1440 > th dose independent rect. 13 1
13 33.21 temperature 10.0 1440 > th dose independent rect. 14 23
17 33.27 humidity 80.0 30 < th dose independent rect. 12 1
18 33.29 atmosphere 1010.0 30 < th dose independent rect. 12 1
19 33.30 temperature 20.0 30 > th dose independent rect. 12 1
21 33.33 wind 7.0 30 < th dose independent rect. 12 1
23 33.35 humidity 60.0 30 > th dose independent rect. 12 1
25 33.36 temperature 10.0 30 > th dose independent rect. 12 1
27 33.36 atmosphere 995.0 30 > th dose independent rect. 12 1
30 33.36 precipitation 0.1 30 < th dose independent rect. 12 1
31 33.36 temperature 10.0 30 > th dose independent rect. 13 23
32 33.36 precipitation 0.1 30 < th dose dependent rect. 12 1
33 33.37 wind 1.0 30 > th dose independent rect. 12 1
34 33.37 radiation 1.0 30 > th dose dependent rect. 12 1
35 33.38 wind 9.0 30 < th dose dependent rect. 12 1
39 33.51 atmosphere 995.0 30 > th dose dependent rect. 12 1
43 33.62 atmosphere 1015.0 30 < th dose dependent rect. 12 1
47 33.75 humidity 90.0 30 < th dose dependent rect. 12 1
49 33.84 temperature 30.0 30 < th dose independent rect. 12 1
50 33.84 humidity 50.0 30 > th dose dependent rect. 12 1
52 33.85 wind 1.0 30 > th dose dependent rect. 12 1
97 36.07 wind 9.0 30 < th dose independent rect. 13 23
108 36.77 atmosphere 995.0 30 > th dose independent rect. 13 23
110 36.94 precipitation 0.1 30 < th dose independent rect. 13 23
111 36.94 precipitation 0.1 30 < th dose dependent rect. 13 23
262 38.70 temperature 30.0 10 < th dose independent rect. 13 23
266 38.76 humidity 50.0 30 > th dose independent rect. 13 23
368 39.45 temperature 30.0 10 < th dose independent sin 1 NA
372 39.49 radiation 40.0 30 > th dose independent rect. 12 23
375 39.53 temperature 30.0 10 < th dose independent no NA NA
406 39.66 temperature 30.0 10 < th dose independent sin 17 NA
434 39.79 temperature 30.0 10 > th dose independent sin 21 NA
453 39.80 temperature 30.0 10 > th dose independent rect. 14 23
520 39.96 radiation 1.0 30 > th dose independent rect. 13 23
574 40.01 temperature 30.0 10 > th dose independent no NA NA
687 40.07 radiation 40.0 10 > th dose independent sin 13 NA
723 40.35 atmosphere 1015.0 30 < th dose independent rect. 13 23
761 40.42 temperature 30.0 10 < th dose independent rect. 23 23
762 40.42 radiation 40.0 10 > th dose dependent sin 13 NA
768 40.43 temperature 30.0 10 < th dose independent rect. 21 23
780 40.50 wind 1.0 30 > th dose independent rect. 13 23
790 40.55 temperature 30.0 10 < th dose independent rect. 5 23
795 40.57 temperature 30.0 10 < th dose independent rect. 3 23
799 40.58 temperature 10.0 30 > th dose dependent rect. 13 23
810 40.65 atmosphere 1010.0 90 > th dose independent rect. 8 1
811 40.65 atmosphere 1010.0 10 > th dose independent rect. 9 1
867 40.65 temperature 25.0 270 > th dose dependent rect. 19 18
875 40.67 temperature 30.0 10 < th dose independent rect. 11 23
895 40.68 temperature 25.0 270 > th dose dependent rect. 22 15
927 40.78 wind 1.0 90 < th dose dependent rect. 8 2
969 40.83 radiation 30.0 90 > th dose independent rect. 8 2