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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0936500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.0144) R2 : 0.00139
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0241 (0.0302) R2dN8 : 0.00179 R2N8 : 0.00139
σ : 0.27
deviance : 33.56
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.28 0.259 2.85 0.0457 0.0229 0.689 0.294 -0.197 0.00814 13.2 -0.03959 656 -- --
30.29 0.256 2.85 0.0413 0.027 0.664 0.301 -- 0.0104 13.2 -0.28 656 -- --
30.63 0.258 2.85 0.0583 0.0224 0.681 -- -0.271 0.00929 12.1 -0.06253 656 -- --
30.65 0.258 2.85 0.0649 0.0252 0.644 -- -- 0.0206 12.3 -0.1811 656 -- --
30.65 0.258 2.85 0.0613 -- 0.63 -- -0.137 0.0068 -- -1.4e-05 656 -- --
32.96 0.269 2.85 0.13 0.000921 -- -0.176 -- -0.0101 1.98 -- -- -- --
33.08 0.269 2.85 0.135 0.00168 -- -- -- -0.00908 21.4 -- -- -- --
30.65 0.258 2.85 0.0635 -- 0.593 -- -- 0.00745 -- -0.00391 656 -- --
30.74 0.258 2.85 -- 0.0164 0.648 -- -- 0.0148 12.1 -0.07278 656 -- --
33.08 0.269 2.85 0.135 -- -- -- -- -0.00909 -- -- -- -- --
33.56 0.271 2.86 -- 0.00321 -- -- -- -0.0241 1.15 -- -- -- --
30.76 0.258 2.85 -- -- 0.621 -- -- 0.00162 -- -0.02929 656 -- --
33.56 0.27 2.86 -- -- -- -- -- -0.0241 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.59 temperature 25.0 10 > th dose independent rect. 23 1
5 27.09 precipitation 0.1 270 > th dose independent rect. 21 1
6 27.09 precipitation 0.1 270 > th dose dependent rect. 21 1
8 27.43 wind 1.0 10 < th dose independent rect. 13 1
18 27.43 wind 1.0 10 < th dose dependent rect. 13 1
28 27.45 wind 1.0 90 < th dose dependent rect. 13 1
45 27.47 wind 1.0 90 < th dose independent rect. 12 2
121 27.69 wind 1.0 30 < th dose dependent rect. 9 6
346 29.04 wind 1.0 30 < th dose dependent sin 22 NA
347 29.05 precipitation 0.1 1440 > th dose dependent rect. 18 1
349 29.07 wind 1.0 30 < th dose independent sin 22 NA
453 29.49 precipitation 0.1 1440 > th dose independent rect. 18 1
456 29.51 wind 1.0 10 > th dose independent sin 21 NA
463 29.59 humidity 90.0 270 > th dose dependent rect. 20 1
492 29.73 humidity 90.0 1440 > th dose dependent rect. 19 1
502 29.81 precipitation 0.1 1440 < th dose independent rect. 18 2
504 29.81 precipitation 0.1 1440 < th dose dependent rect. 18 2
516 29.88 precipitation 0.1 720 > th dose dependent rect. 18 20
521 29.91 precipitation 0.1 720 > th dose dependent rect. 18 23
546 29.99 precipitation 0.1 720 > th dose dependent rect. 18 10
599 30.11 precipitation 0.1 720 > th dose dependent rect. 18 14
601 30.12 precipitation 0.1 1440 < th dose independent rect. 18 9
602 30.12 precipitation 0.1 720 > th dose independent rect. 3 17
605 30.12 precipitation 0.1 1440 < th dose dependent rect. 18 9
612 30.14 precipitation 0.1 1440 < th dose independent rect. 18 5
616 30.14 precipitation 0.1 1440 < th dose dependent rect. 18 5
642 30.20 wind 1.0 1440 > th dose independent rect. 17 2
661 30.23 precipitation 0.1 720 > th dose independent sin 1 NA
690 30.25 precipitation 0.1 720 > th dose independent rect. 18 23
704 30.28 wind 1.0 1440 < th dose independent rect. 18 1
712 30.28 humidity 90.0 1440 > th dose dependent rect. 13 10
736 30.30 humidity 90.0 720 > th dose dependent rect. 7 14
737 30.30 precipitation 0.1 720 > th dose dependent rect. 3 14
744 30.31 precipitation 0.1 720 > th dose independent rect. 4 13
755 30.33 precipitation 0.1 720 < th dose independent sin 2 NA
758 30.33 precipitation 0.1 720 < th dose dependent sin 2 NA
763 30.34 humidity 90.0 270 > th dose dependent rect. 19 4
777 30.35 precipitation 0.1 720 > th dose dependent rect. 3 17
781 30.36 precipitation 0.1 1440 > th dose dependent rect. 16 1
788 30.37 precipitation 0.1 720 > th dose independent rect. 18 20
808 30.39 precipitation 0.1 720 < th dose independent rect. 21 23
812 30.39 precipitation 0.1 720 < th dose dependent rect. 21 23
816 30.40 humidity 90.0 720 > th dose dependent sin 22 NA
820 30.41 precipitation 0.1 1440 > th dose independent rect. 16 3
823 30.41 precipitation 0.1 1440 > th dose dependent rect. 16 3
833 30.42 precipitation 0.1 1440 > th dose dependent rect. 14 3
847 30.44 precipitation 0.1 720 > th dose dependent sin 12 NA
848 30.44 wind 1.0 1440 < th dose dependent rect. 18 1
850 30.45 precipitation 0.1 720 < th dose independent rect. 5 15
853 30.45 precipitation 0.1 720 > th dose dependent sin 2 NA
865 30.45 precipitation 0.1 720 < th dose dependent rect. 5 15
870 30.46 precipitation 0.1 1440 < th dose independent rect. 16 1
872 30.46 precipitation 0.1 1440 < th dose independent rect. 16 4
876 30.46 precipitation 0.1 720 > th dose independent rect. 16 22
877 30.46 precipitation 0.1 1440 < th dose dependent rect. 16 1
879 30.46 precipitation 0.1 1440 < th dose dependent rect. 16 4
889 30.46 precipitation 0.1 720 > th dose dependent rect. 16 23
892 30.47 precipitation 0.1 720 > th dose independent rect. 13 20
896 30.47 precipitation 0.1 720 > th dose dependent no NA NA
901 30.47 precipitation 0.1 720 > th dose dependent rect. 13 20
911 30.47 precipitation 0.1 720 > th dose dependent rect. 9 23
918 30.48 precipitation 0.1 1440 > th dose independent rect. 16 1
925 30.48 precipitation 0.1 720 > th dose independent rect. 7 22
941 30.48 precipitation 0.1 720 > th dose dependent rect. 7 22
945 30.49 precipitation 0.1 720 > th dose independent no NA NA
946 30.49 precipitation 0.1 720 < th dose independent no NA NA
959 30.49 humidity 90.0 1440 > th dose dependent sin 19 NA
960 30.49 precipitation 0.1 720 < th dose dependent no NA NA
967 30.50 precipitation 0.1 720 > th dose independent rect. 13 16
988 30.51 precipitation 0.1 720 > th dose dependent rect. 13 17