Os01g0936100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase.
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Os01g0936100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.6 | 0.223 | 10 | -0.108 | 0.997 | 0.679 | 0.352 | 0.732 | -0.0769 | 7.32 | 29.09 | 247 | -- | -- |
| 23.19 | 0.224 | 10 | 0.0214 | 0.995 | 0.693 | 0.434 | -- | -0.0512 | 7.31 | 30.42 | 245 | -- | -- |
| 22.92 | 0.223 | 10 | -0.117 | 0.994 | 0.69 | -- | 0.842 | -0.0812 | 7.33 | 29.34 | 247 | -- | -- |
| 23.68 | 0.227 | 10 | 0.029 | 0.992 | 0.704 | -- | -- | -0.0564 | 7.33 | 31.01 | 245 | -- | -- |
| 61.08 | 0.364 | 10.1 | -0.0952 | -- | 1.49 | -- | 1.63 | -0.0276 | -- | 34.3 | 424 | -- | -- |
| 29.06 | 0.253 | 10 | -0.151 | 1.15 | -- | 0.563 | -- | -0.182 | 6.81 | -- | -- | -- | -- |
| 29.87 | 0.256 | 10 | -0.141 | 1.15 | -- | -- | -- | -0.184 | 6.82 | -- | -- | -- | -- |
| 61.23 | 0.364 | 10 | 0.224 | -- | 1.59 | -- | -- | 0.0632 | -- | 44.21 | 434 | -- | -- |
| 23.7 | 0.227 | 10 | -- | 0.994 | 0.692 | -- | -- | -0.0614 | 7.32 | 31.03 | 240 | -- | -- |
| 99.59 | 0.466 | 10.1 | -0.116 | -- | -- | -- | -- | -0.162 | -- | -- | -- | -- | -- |
| 30.4 | 0.258 | 10 | -- | 1.15 | -- | -- | -- | -0.168 | 6.83 | -- | -- | -- | -- |
| 62.46 | 0.368 | 10 | -- | -- | 1.52 | -- | -- | 0.0289 | -- | 35.5 | 425 | -- | -- |
| 99.95 | 0.467 | 10.1 | -- | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 5 | 21.32 | temperature | 25 | 270 | < th | dose dependent | sin | 19 | NA |
| 10 | 21.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 10 |
| 11 | 21.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 12 |
| 15 | 21.48 | temperature | 25 | 90 | < th | dose dependent | sin | 17 | NA |
| 23 | 21.60 | temperature | 25 | 10 | < th | dose dependent | sin | 17 | NA |
| 44 | 21.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 10 |
| 72 | 21.86 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 14 |
| 74 | 21.87 | temperature | 15 | 90 | > th | dose dependent | sin | 15 | NA |
| 77 | 21.89 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 12 |
| 84 | 21.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 107 | 22.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 13 |
| 110 | 22.02 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 17 |
| 140 | 22.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 144 | 22.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 181 | 22.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 16 |
| 232 | 22.23 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 13 |
| 287 | 22.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 317 | 22.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 7 |
| 327 | 22.39 | temperature | 25 | 270 | < th | dose independent | sin | 19 | NA |
| 343 | 22.41 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 13 |
| 422 | 22.54 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 21 |
| 436 | 22.56 | temperature | 25 | 270 | > th | dose independent | sin | 19 | NA |
| 461 | 22.60 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 502 | 22.67 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 10 |
| 519 | 22.70 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 525 | 22.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 540 | 22.73 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 11 |
| 644 | 22.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 666 | 22.93 | temperature | 20 | 30 | > th | dose independent | rect. | 16 | 13 |
| 696 | 22.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 711 | 23.01 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 777 | 23.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 803 | 23.12 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 869 | 23.20 | temperature | 25 | 720 | > th | dose independent | sin | 22 | NA |
| 870 | 23.20 | temperature | 25 | 720 | < th | dose independent | sin | 22 | NA |
| 891 | 23.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 901 | 23.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 15 |
| 908 | 23.22 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 925 | 23.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |