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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0935000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0223) R2 : 0.00936
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0976 (0.047) R2dN8 : 0.0121 R2N8 : 0.00936
σ : 0.42
deviance : 81.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.3 0.413 2.39 -1.21 0.0989 -46.6 -0.0167 -99 0.11 9.9 14.99 706 -- --
80.31 0.421 2.99 0.00348 0.112 0.178 -0.111 -- 0.0987 10.1 14.99 706 -- --
77.3 0.409 2.39 -1.21 0.099 -46.6 -- -99 0.109 9.94 14.99 705 -- --
78.23 0.415 2.98 0.0573 0.106 0.681 -- -- 0.113 10.1 16.1 398 -- --
77.89 0.411 2.4 -1.2 -- -46.6 -- -98.9 0.11 -- 14.99 695 -- --
80.37 0.42 2.99 -0.00411 0.109 -- -0.0915 -- 0.0969 10.1 -- -- -- --
80.4 0.42 2.99 -0.00756 0.109 -- -- -- 0.0968 10.2 -- -- -- --
78.83 0.414 2.98 0.0649 -- 0.673 -- -- 0.118 -- 16.15 410 -- --
78.31 0.414 2.98 -- 0.106 0.651 -- -- 0.107 10.1 16.1 397 -- --
81.13 0.421 2.99 -0.00913 -- -- -- -- 0.0965 -- -- -- -- --
80.41 0.419 2.99 -- 0.109 -- -- -- 0.0976 10.2 -- -- -- --
78.93 0.414 2.99 -- -- 0.635 -- -- 0.11 -- 16.15 419 -- --
81.13 0.42 2.99 -- -- -- -- -- 0.0976 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.18 wind 1.0 720 < th dose dependent rect. 1 1
6 73.85 wind 1.0 1440 < th dose dependent rect. 18 8
9 73.92 humidity 50.0 4320 < th dose independent rect. 12 2
15 74.00 wind 1.0 1440 < th dose dependent rect. 21 1
21 74.03 wind 1.0 1440 < th dose dependent rect. 20 6
56 74.75 wind 1.0 720 < th dose dependent rect. 9 17
60 74.80 wind 5.0 10 > th dose dependent rect. 12 1
62 74.83 wind 1.0 90 > th dose dependent rect. 10 1
79 75.18 wind 1.0 1440 < th dose dependent sin 16 NA
85 75.39 wind 1.0 1440 < th dose independent rect. 18 8
87 75.42 wind 1.0 720 < th dose independent rect. 1 1
88 75.42 atmosphere 1005.0 90 > th dose independent rect. 10 1
90 75.45 radiation 30.0 10 < th dose independent rect. 10 2
92 75.46 wind 5.0 30 > th dose independent rect. 11 1
118 75.66 wind 1.0 1440 < th dose independent rect. 21 2
119 75.67 wind 1.0 1440 < th dose independent rect. 19 4
121 75.69 atmosphere 995.0 90 > th dose dependent rect. 10 1
123 75.70 wind 9.0 90 < th dose independent rect. 11 23
138 75.84 atmosphere 995.0 10 > th dose dependent rect. 10 2
141 75.86 wind 1.0 720 < th dose dependent rect. 24 6
148 75.93 temperature 30.0 90 < th dose independent rect. 10 1
157 75.97 temperature 15.0 90 > th dose independent rect. 3 16
159 75.98 temperature 15.0 90 > th dose independent rect. 23 22
163 76.02 wind 1.0 1440 > th dose independent rect. 19 4
169 76.06 wind 1.0 270 > th dose dependent rect. 7 4
173 76.08 temperature 10.0 90 > th dose independent rect. 10 1
174 76.08 atmosphere 995.0 90 > th dose independent rect. 10 1
175 76.08 atmosphere 1015.0 90 < th dose independent rect. 10 1
176 76.08 temperature 10.0 90 > th dose independent rect. 11 23
181 76.11 humidity 50.0 90 > th dose independent rect. 10 1
182 76.11 wind 9.0 10 < th dose independent rect. 23 23
184 76.11 radiation 40.0 10 < th dose dependent rect. 10 2
187 76.12 temperature 30.0 10 < th dose independent rect. 10 2
190 76.13 precipitation 0.1 90 < th dose independent rect. 10 1
192 76.13 precipitation 0.1 90 < th dose dependent rect. 10 1
199 76.17 temperature 15.0 1440 > th dose independent rect. 8 5
200 76.17 wind 1.0 1440 > th dose independent rect. 17 9
207 76.19 atmosphere 995.0 90 > th dose independent rect. 11 23
212 76.21 radiation 1.0 90 > th dose independent rect. 10 1
216 76.22 temperature 15.0 270 > th dose independent rect. 3 14
219 76.23 humidity 50.0 10 > th dose independent rect. 10 2
225 76.26 wind 9.0 90 < th dose independent rect. 10 1
226 76.26 atmosphere 995.0 10 > th dose independent rect. 12 22
227 76.27 radiation 1.0 10 > th dose independent rect. 10 2
231 76.28 wind 1.0 10 > th dose independent rect. 10 2
233 76.29 precipitation 0.1 90 < th dose independent rect. 11 23
236 76.29 precipitation 0.1 90 < th dose dependent rect. 11 23
239 76.30 wind 9.0 10 < th dose independent rect. 12 22
245 76.31 temperature 10.0 10 > th dose independent rect. 10 2
247 76.31 atmosphere 995.0 10 > th dose independent rect. 10 2
248 76.31 atmosphere 1015.0 10 < th dose independent rect. 10 2
249 76.31 precipitation 0.1 10 < th dose independent rect. 10 2
250 76.31 temperature 10.0 10 > th dose independent rect. 12 22
252 76.31 precipitation 0.1 10 < th dose dependent rect. 10 2
269 76.37 temperature 15.0 4320 > th dose independent rect. 10 3
271 76.37 humidity 50.0 90 > th dose dependent rect. 10 1
272 76.37 radiation 40.0 90 < th dose dependent rect. 10 1
280 76.39 wind 1.0 720 < th dose dependent rect. 5 22
297 76.42 precipitation 0.1 10 < th dose independent rect. 12 22
301 76.42 precipitation 0.1 10 < th dose dependent rect. 12 22
303 76.43 wind 1.0 30 > th dose dependent rect. 7 5
308 76.44 temperature 15.0 1440 > th dose independent rect. 23 5
314 76.45 atmosphere 995.0 1440 > th dose independent rect. 11 2
316 76.45 temperature 10.0 1440 > th dose independent rect. 13 22
333 76.50 wind 1.0 1440 > th dose independent rect. 1 1
336 76.50 atmosphere 1010.0 10 < th dose independent rect. 12 10
343 76.52 temperature 30.0 90 < th dose independent rect. 21 15
351 76.54 atmosphere 1010.0 10 < th dose independent rect. 12 8
353 76.54 humidity 50.0 90 > th dose dependent rect. 23 11
371 76.59 temperature 10.0 10 > th dose dependent rect. 12 10
377 76.61 atmosphere 995.0 90 > th dose independent rect. 12 9
386 76.62 radiation 40.0 90 < th dose dependent rect. 23 11
388 76.63 atmosphere 1010.0 90 < th dose independent rect. 12 9
394 76.64 wind 7.0 90 < th dose independent rect. 3 16
397 76.65 wind 5.0 270 > th dose independent rect. 8 1
399 76.65 wind 5.0 270 > th dose independent rect. 8 3
403 76.65 wind 9.0 90 < th dose independent rect. 12 9
404 76.65 temperature 10.0 90 > th dose independent rect. 12 9
407 76.65 temperature 10.0 90 > th dose independent rect. 21 15
408 76.65 atmosphere 995.0 90 > th dose independent rect. 21 15
412 76.66 precipitation 0.1 90 < th dose independent rect. 21 15
415 76.66 precipitation 0.1 90 < th dose dependent rect. 21 15
420 76.67 humidity 50.0 10 > th dose independent rect. 12 22
421 76.67 atmosphere 995.0 30 > th dose dependent rect. 10 13
436 76.70 wind 1.0 90 > th dose independent rect. 12 9
439 76.71 temperature 10.0 1440 > th dose independent rect. 13 8
443 76.71 wind 1.0 10 > th dose independent rect. 12 10
444 76.71 temperature 10.0 10 > th dose independent rect. 12 10
448 76.71 temperature 10.0 10 > th dose independent rect. 22 14
449 76.71 atmosphere 995.0 10 > th dose independent rect. 22 14
450 76.71 temperature 10.0 1440 > th dose independent rect. 21 16
453 76.71 atmosphere 995.0 1440 > th dose independent rect. 21 16
455 76.71 temperature 10.0 30 > th dose dependent rect. 12 8
471 76.73 precipitation 0.1 10 < th dose independent rect. 12 10
472 76.73 atmosphere 1015.0 10 < th dose independent rect. 22 14
474 76.73 atmosphere 1015.0 90 < th dose independent rect. 21 15
475 76.73 radiation 40.0 30 < th dose independent rect. 10 17
480 76.73 precipitation 0.1 10 < th dose dependent rect. 12 10
494 76.74 temperature 10.0 10 > th dose dependent rect. 12 22
507 76.75 precipitation 0.1 90 < th dose independent rect. 12 9
521 76.75 precipitation 0.1 90 < th dose dependent rect. 12 9
524 76.76 precipitation 0.1 10 < th dose independent rect. 12 8
531 76.76 precipitation 0.1 10 < th dose dependent rect. 12 8
572 76.80 temperature 15.0 270 > th dose independent rect. 23 19
579 76.81 temperature 15.0 4320 > th dose independent rect. 11 6
605 76.83 wind 1.0 90 > th dose independent rect. 9 14
607 76.83 humidity 50.0 30 > th dose independent rect. 20 16
627 76.84 radiation 40.0 90 < th dose independent rect. 23 11
663 76.88 temperature 25.0 270 > th dose independent rect. 18 17
667 76.89 humidity 50.0 4320 < th dose dependent rect. 12 2
688 76.91 wind 9.0 90 < th dose independent rect. 23 10
689 76.91 temperature 10.0 90 > th dose independent rect. 23 10
690 76.91 humidity 50.0 90 > th dose independent rect. 23 10
691 76.91 atmosphere 995.0 90 > th dose independent rect. 23 10
692 76.91 temperature 10.0 90 > th dose independent rect. 9 14
693 76.91 radiation 40.0 30 < th dose independent rect. 10 14
694 76.91 precipitation 0.1 90 < th dose independent rect. 9 14
698 76.91 temperature 20.0 90 > th dose dependent rect. 22 1
702 76.91 precipitation 0.1 90 < th dose dependent rect. 9 14
707 76.92 temperature 15.0 1440 > th dose independent rect. 8 9
715 76.93 humidity 90.0 1440 < th dose independent rect. 11 1
719 76.93 atmosphere 995.0 10 > th dose independent rect. 23 23
733 76.94 temperature 10.0 90 > th dose dependent rect. 3 16
735 76.95 wind 5.0 10 < th dose independent rect. 22 1
737 76.95 atmosphere 1015.0 90 < th dose independent rect. 9 14
742 76.95 temperature 30.0 30 < th dose dependent rect. 22 1
751 76.96 temperature 10.0 10 > th dose independent rect. 22 1
753 76.96 temperature 30.0 10 < th dose independent rect. 22 1
754 76.96 humidity 50.0 10 > th dose independent rect. 22 1
757 76.96 atmosphere 995.0 10 > th dose independent rect. 22 1
760 76.96 atmosphere 1010.0 10 < th dose independent rect. 22 1
762 76.96 radiation 1.0 10 < th dose independent rect. 22 1
767 76.96 precipitation 0.1 10 < th dose independent rect. 22 1
771 76.96 precipitation 0.1 90 < th dose independent rect. 23 10
772 76.96 atmosphere 1015.0 10 < th dose independent rect. 10 14
774 76.96 temperature 10.0 10 > th dose independent rect. 23 23
776 76.96 wind 7.0 10 < th dose dependent rect. 22 1
778 76.96 atmosphere 995.0 10 > th dose dependent rect. 22 1
780 76.96 radiation 1.0 10 < th dose dependent rect. 22 1
785 76.96 precipitation 0.1 10 < th dose dependent rect. 22 1
787 76.96 precipitation 0.1 90 < th dose dependent rect. 23 10
791 76.97 wind 1.0 10 > th dose independent rect. 22 1
800 76.97 humidity 50.0 10 > th dose dependent rect. 22 1
804 76.97 atmosphere 995.0 30 > th dose dependent rect. 12 8
812 76.98 wind 9.0 30 < th dose independent rect. 20 16
814 76.98 temperature 10.0 10 > th dose dependent rect. 22 1
817 76.98 atmosphere 1015.0 30 < th dose dependent rect. 22 1
824 76.99 radiation 30.0 270 < th dose independent rect. 7 5
862 77.00 wind 1.0 30 > th dose dependent rect. 22 1
869 77.00 humidity 90.0 30 < th dose dependent rect. 22 1
876 77.00 radiation 1.0 14400 < th dose dependent rect. 23 1
880 77.01 humidity 90.0 10 < th dose independent rect. 22 1
882 77.01 temperature 30.0 90 < th dose independent rect. 23 10
884 77.01 radiation 20.0 90 < th dose independent rect. 23 11
893 77.01 radiation 20.0 43200 < th dose dependent rect. 23 1
903 77.02 precipitation 0.1 10 < th dose independent rect. 10 14
906 77.02 atmosphere 1015.0 10 < th dose independent rect. 12 22
907 77.02 temperature 25.0 10 > th dose dependent rect. 22 1
913 77.02 precipitation 0.1 10 < th dose dependent rect. 10 14
914 77.02 wind 1.0 90 > th dose dependent rect. 21 15
920 77.03 wind 9.0 10 < th dose independent rect. 24 10
921 77.03 temperature 10.0 10 > th dose independent rect. 24 10
922 77.03 humidity 50.0 10 > th dose independent rect. 24 10
923 77.03 atmosphere 995.0 10 > th dose independent rect. 24 10
924 77.03 temperature 10.0 10 > th dose independent rect. 10 14
928 77.03 precipitation 0.1 30 < th dose independent rect. 23 23
937 77.03 atmosphere 995.0 30 > th dose dependent rect. 20 16
939 77.03 precipitation 0.1 30 < th dose dependent rect. 23 23
941 77.04 wind 9.0 1440 < th dose independent rect. 23 1
943 77.04 temperature 10.0 1440 > th dose independent rect. 23 1
946 77.04 temperature 30.0 1440 < th dose independent rect. 23 1
950 77.04 humidity 50.0 1440 > th dose independent rect. 23 1
960 77.04 atmosphere 995.0 1440 > th dose independent rect. 23 1
961 77.04 radiation 1.0 1440 < th dose independent rect. 23 1
987 77.04 wind 1.0 10 > th dose independent rect. 10 14
989 77.04 temperature 10.0 1440 > th dose independent rect. 24 23
999 77.04 radiation 1.0 1440 < th dose dependent rect. 23 1